ViswanathanM et al 2005 Fig6A Ethanol HS, 7 genes

Gene list file name:ViswanathanM2005.Fig6A_Ethanol_HS.txt
Type of gene identifier:MA primer pair (sjj)
Description:ViswanathanM et al 2005 Fig6A Ethanol Heat Shock  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C12C8.1 C12C8.1 P W All gene names: hsp-70; C12C8.1; 1J898; CE08110; NM_060084; WBGene00002026; WP:CE08110 WormBase description: hsp-70 encodes a member of the hsp70 family. WormBase CDS description: heat shock protein 70
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 heat shock,                               
                                              GuhaThakurta et al 2002  T1 upregu on heat stress,                                 
                                              Jones et al 2001  Dauer specific genes P<0.05, Kwon et                             
                                              al 2004  T1 Class1 rapid-induction Ethanol, Lund et al                             
                                              2002 Aging time course Fig2C heatshock, Lund et al 2002                            
                                               Fig1 aging-regulated genes, Romagnolo et al 2002                                  
                                              Fig2a heat shock, Shen et al 2005  T1 hif-1indepen                                 
                                              hypoxia, ViswanathanM et al 2005  S2 UPR genes,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  Fig6A Ethanol HS, Wang et al                              
                                              2003  S8 SAGE genes in the dauer exit, Wang et al 2003                             
                                              S7 SAGE genes in the dataset                                                       

C30C11.4 C30C11.4 P W All gene names: C30C11.4; C30C11.4.1; C30C11.4.2; 3J534; CE00103; WBGene00016250; WP:CE00103 WormBase description: Msi3p
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Kwon et al 2004 T1 late-induction                                     
                                              Ethanol-response, Lund et al 2002 Aging time course                                
                                              Fig2C heatshock, McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Romagnolo et al 2002                             
                                              Fig2a heat shock, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated, ViswanathanM et al 2005  Fig6A Ethanol HS                               

F08G2.5 F08G2.5 P W All gene names: F08G2.5; 2O122; CE19777; WBGene00008577; WP:CE19777
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Jones et al 2001  Dauer specific genes                                
                                              P<0.05, Kwon et al 2004 T1 late-induction                                          
                                              Ethanol-response, ViswanathanM et al 2005  Fig6A                                   
                                              Ethanol HS, Wang et al 2003  S7 SAGE genes in the                                  
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

T27E4.2 T27E4.2 P W All gene names: hsp-16.11; T27E4.2; 5J571; NM_072956; WBGene00002017 WormBase description: hsp-16.11 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins, and that is identical to the protein encoded by hsp-16.1; hsp-16.11 expression is induced in response to heat shock or other environmental stresses; HSP-16.11 is likely to function as passive ligand temporarily preventing unfolded proteins from aggregating; HSP-16.11 has been shown to interact with intracellular human beta amyloid peptide, a primary component of the extracellular plaques found in Alzheimer's disease. WormBase CDS description: heat shock protein HSP16-1
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, GuhaThakurta et al 2002  T1 upregu on                               
                                              heat stress, Romagnolo et al 2002  Fig2a heat shock,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 UPR genes, ViswanathanM et                             
                                              al 2005  Fig6A Ethanol HS                                                          

T27F2.4 T27F2.4 P W All gene names: T27F2.4; 5M130; CE06522; WBGene00012101; WP:CE06522
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, ViswanathanM et al 2005  Fig6A Ethanol HS                             

W02D9.10 W02D9.10 P W All gene names: W02D9.10; 1N143; CE14472; WBGene00012216; WP:CE14472
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Lund et al 2002  Fig4 Mount 15, Reinke et                             
                                              al 2004, list of genes in cluster A, Reinke et al 2004,                            
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt herm enriched gen, Reinke et al 2004, IVb                               
                                              male soma enriched genes, Shen et al 2005  T1                                      
                                              hif-1indepen hypoxia, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, ViswanathanM et al 2005  Fig6A                                 
                                              Ethanol HS, Wang et al 2003  S3  genes pass one-way                                
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 Dauer Enriched                                                 

ZK1290.5 ZK1290.5 P W All gene names: ZK1290.5; 2H819; CE36068; WBGene00022887; WP:CE36068 WormBase description: Aldo/keto reductase
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, ViswanathanM et al 2005  Fig6A Ethanol HS