Portman et al 2004 T1 newly found ray-genes in25c, 13 genes

Gene list file name:Portman2004.T1_newlyfound_ray-genes_in25candidates
Type of gene identifier:MA primer pair (sjj)
Description:Portman et al 2004 Table1: newlyfound ray-genes in 25 candidates  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AH6.3 AH6.3 P W All gene names: AH6.3; 2J805; CE01457; WBGene00007081; WP:CE01457
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, fem3 enriched genes, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, wt males vs glp4 male enriched , Reinke et al                                
                                              2004, list of genes in cluster D, Reinke et al 2004,                               
                                              shared sperm                                                                       

B0272.1 B0272.1 P W All gene names: tbb-4; B0272.1; CE00850; NM_077184; WBGene00006538; WP:CE00850; XK54 WormBase description: tubulin beta chain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Portman et al 2004  T1 newly found ray-genes                              
                                              in25c, Portman et al 2004  T1 25 candidate ray genes,                              
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C03A7.3 C03A7.3 P W All gene names: srw-140; C03A7.3; 5F641; CE34521; NM_071984; WBGene00005887; WP:CE34521 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes                                                                          

C17H12.9 C17H12.9 P W All gene names: ceh-48; C17H12.9; 4H577; CE16869; WBGene00015934; WP:CE16869 WormBase description: C17H12.9 encodes a ONECUT class CUT homeobox protein with a single N-terminal cut domain; the cut domain may be a compact DNA-binding domain composed of alpha helices; C17H12.9 is strongly affiliated with, and may be orthologous to, Drosophila ONECUT and mammalian HNF6 proteins; C17H12.9 has no obvious function in mass RNAi assays. WormBase CDS description: homeobox protein
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, mixed sperm soma, Reinke                             
                                              et al 2004, GO categories, Reinke et al 2004, fem3                                 
                                              enriched genes                                                                     

C37H5.10 C37H5.10 P W All gene names: cwp-1; C37H5.10; 5F318; CE08633; NM_071893; WBGene00000859; WP:CE08633 WormBase description: cwp-1 encodes a nematode-specific protein that is coexpressed with lov-1 and pkd-2.
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes                                                                              

C37H5.11 C37H5.11 P W All gene names: cwp-2; C37H5.11; 5F320; CE08634; NM_071894; WBGene00000860; WP:CE08634 WormBase description: cwp-2 encodes a nematode-specific protein that is coexpressed with lov-1 and pkd-2.
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

C37H5.4 C37H5.4 P W All gene names: cwp-3; C37H5.4; 5F321; CE33278; NM_071895; WBGene00000861; WP:CE33278 WormBase description: cwp-3 encodes an unfamiliar protein predicted to be secreted and alleged to be coexpressed with polycystins; CWP-3 is dispensable for viability and gross morphology in mass RNAi screens.
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes                                                                          

F28C6.1 F28C6.1 P W All gene names: F28C6.1; 2I881; CE03272; WBGene00009202; WP:CE03272 WormBase description: transcription factor AP-2 like
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K11D12.1 K11D12.1 P W All gene names: cwp-4; K11D12.1; 5F533; CE30382; NM_071955; WBGene00000862; WP:CE30382 WormBase description: cwp-4 encodes a protein with some similarity to mucins that is predicted to be secreted, and is alleged to be coexpressed with polycystins; CWP-4 is dispensable for viability and gross morphology in mass RNAi screens.
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes                                                                          

K11G9.4 K11G9.4 P W All gene names: egl-46; K11G9.4; 5H160; CE07377; NM_072293; WBGene00001210; WP:CE07377 WormBase description: egl-46 encodes a predicted transcription factor and conserved member of a TFIIA-like zinc finger protein family that affects coordinated locomotion, morphology and process formation of the touch cells, male mating efficiency, HSN cell migration, differentiation, and axonal outgrowth, serotonin production and also affects terminal divisions of the Q neuroblasts; acts to inhibit touch cell fate in FLP cells together with egl-44 and is expressed dynamically in neurons, specifically in touch cells, FLP, and HSN neurons. WormBase CDS description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Portman et al 2004  T1 newly                                 
                                              found ray-genes in25c, Portman et al 2004  T1 25                                   
                                              candidate ray genes, Reinke et al 2004, list of genes                              
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 daf-16                                  
                                              Resveratrol                                                                        

ZK1251.8 ZK1251.8 P W All gene names: twk-21; twk-9; ZK1251.8; 4K459; CE03855; NM_069323; WBGene00006664; WP:CE03855 WormBase description: potassium channel protein
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes                                                                          

ZK682.4 ZK682.4 P W All gene names: CEABF-1; hlh-10; ZK682.4; 5J758; CE05102; NM_073000; WBGene00001954; WP:CE05102 WormBase description: helix-loop-helix
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

ZK909.4 ZK909.4 P W All gene names: ces-2; ZK909.4; 1P559; CE15479; NM_061209; WBGene00000469; WP:CE15479 WormBase description: ces-2 encodes a basic region leucine-zipper (bZIP) transcription factor, most similar in sequence and binding specificity to the PAR (proline- and acid-rich) subfamily of bZIP proteins; ces-2 is required to activate programmed cell death in the sister cells of the serotoninergic neurosecretory motor (NSM) neurons, and is transcriptionally inhibited by activated LET-60(G12V). WormBase CDS description: albumin D-binding protein like
                                              
Member of lists (Publications lists):
                                              Portman et al 2004  T1 newly found                                
                                              ray-genes in25c, Portman et al 2004  T1 25 candidate                               
                                              ray genes, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              Romagnolo et al 2002  Fig3b TF