Bishop et al 2004 T2 Egl-9 hif-1 pathway genes, 6 genes

Gene list file name:Bishop2004.T2_6_Egl-9_HIF-1pathway_genes.txt
Type of gene identifier:Cosmid name
Description:Bishop et al 2004 Table2: 6 Egl-9 hif-1 pathway genes  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

F22B5.4 F22B5.4 P W All gene names: F22B5.4; 2I741; CE02199; WBGene00009042; WP:CE02199
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T2 Egl-9 hif-1                                 
                                              pathway genes, Bishop et al 2004  T1 Upregulated in                                
                                              vhl-1 vs WT, Reinke et al 2004, mixed sperm soma,                                  
                                              Reinke et al 2004, fem3 enriched genes, Shen et al 2005                            
                                               T1 hif-1 depend hypoxia, ViswanathanM et al 2005  S2                              
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

F22E12.4 egl-9 P W All gene names: egl-9; F22E12.4; F22E12.4a.1; F22E12.4a.2; F22E12.4b.1; F22E12.4b.2; 5K955; CE27755; CE31342; CE38327; CE38328; NM_171533; WBGene00001178; WP:CE27755; WP:CE31342; WP:CE38327; WP:CE38328 WormBase description: egl-9 encodes a dioxygenase that negatively regulates hypoxia inducible factor (hif-1) by hydroxylating prolyl residues in HIF-1.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S7 SAGE genes in the dataset,                            
                                              Wang et al 2003  S8 SAGE genes in the dauer exit                                   

F35G2.4 phy-2 P W All gene names: phy-2; F35G2.4; F35G2.4.1; F35G2.4.2; 4M976; CE05811; NM_069916; WBGene00004025; WP:CE05811 WormBase description: prolyl 4-hydroxylase alpha subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Romagnolo et al 2002  Fig3b others                                  

K08C7.5 fmo-12 P W All gene names: fmo-12; fmo-2; K08C7.5; 4L447; CE06138; NM_069571; WBGene00001477; WP:CE06138 WormBase description: flavin-containing monoxygenase
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S4 Climbing, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

R01E6.3 cah-4 P W All gene names: cah-4; R01E6.3; CE29433; CE29434; NM_077863; NM_077864; WBGene00000282; WP:CE29433; WP:CE29434; XO161 WormBase description: cah-4 encodes a carbonic anhydrase homolog, which is rather divergent from other such homologs in C. elegans (with at most 38% identity to any other carbonic anhydrase, in or out of C. elegans); it is individually dispensable for viability and for grossly normal postembryonic morphology, and thus may have a more subtle biological function than the basic cytoprotective functions expected for carbonic anhydrases. WormBase CDS description: carbonic anhydrase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

T05B4.2 nhr-57 P W All gene names: nhr-57; T05B4.2; 5E613; CE13195; NM_071752; WBGene00003647; WP:CE13195 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Wang et al 2003  S7 SAGE genes in the dataset,                             
                                              Wang et al 2003  S8 SAGE genes in the dauer exit