Romagnolo et al 2002 Fig3b Cell Structure, 10 genes

Gene list file name:Romagnolo2002.Fig3b_10CellStructure.txt
Type of gene identifier:MA primer pair (sjj)
Description:Romagnolo et al 2002 Fig3b 10 Cell Structure  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C06G3.2 C06G3.2 P W All gene names: klp-18; C06G3.2; 4H807; CE07978; NM_068692; WBGene00002228; WP:CE07978 WormBase description: klp-18 encodes a kinesin motor protein whose motor domain is most similar to that of the Xenopus and human klp2 proteins; loss of klp-18 activity via RNAi indicates that KLP-18 is required for the assembly of a disordered array of acentrosomal (female meiotic) microtubules into an organized, functional, bipolar spindle; in addition, KLP-18 may also play a role in cortex dynamics during post-meiotic development; antibody staining indicates that during meiosis and mitosis (early embryonic) KLP-18 localizes to: 1) spindles, and especially spindle poles, during prometaphase, metaphase, and early anaphase, and 2) the interzone during late anaphase and telophase; in early embryos, KLP-18 is also seen around the nucleus and cell cortex at sites of cell-cell contact; KLP-18 expression in later embryos and larvae is confined to the germ line which, in adults, stains brightly in both distal and proximal regions. WormBase CDS description: kinesin-like protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt herm vs wt male enriched gen, Reinke et al 2004, GO                             
                                              categories, Romagnolo et al 2002  Fig3b Cell Structure                             

C12D8.8 C12D8.8 P W All gene names: col-148; C12D8.8; 5K723; CE05271; NM_073234; WBGene00000721; WP:CE05271 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C18H7.3 C18H7.3 P W All gene names: col-102; C18H7.3; 4B353; CE17428; NM_067556; WBGene00000676; WP:CE17428 WormBase description: cuticular collagen
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C39E9.9 C39E9.9 P W All gene names: col-132; C39E9.9; 4N854; CE05392; NM_070113; WBGene00000706; WP:CE05392 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S4 Climbing, Wang et al                                
                                              2003  S3  genes pass one-way ANOVA, Wang et al 2003  S4                            
                                              genes pass two-wayANOVA P0                                                         

D1069.2 D1069.2 P W All gene names: cpn-2; D1069.2; D1069.2.1; D1069.2.2; 2A629; CE38495; NM_061312; WBGene00000778; WP:CE38495 WormBase description: cpn-2 encodes a calponin homolog, more similar to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25 than to calponin per se. WormBase CDS description: calponin
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F17C11.3 F17C11.3 P W All gene names: col-153; F17C11.3; 5L431; CE05650; NM_073392; WBGene00000726; WP:CE05650 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster A,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Romagnolo et al 2002  Fig3b Cell Structure,                                        
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0, Wang et al 2003  S4                                 
                                              LateList                                                                           

F43G9.10 F43G9.10 P W All gene names: F43G9.10; 1J216; CE10372; WBGene00009671; WP:CE10372 WormBase description: MICROFIBRILLAR-ASSOCIATED PROTEIN 1 (ASSOCIATED MICROFIBRIL PROTEIN) (AMF)
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Romagnolo                             
                                              et al 2002  Fig3b Cell Structure, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated                                                         

F47G4.5 F47G4.5 P W All gene names: F47G4.5; 1O654; CE18703; WBGene00009826; WP:CE18703 WormBase description: F47G4.5 encodes a paralog of MEI-2 that, like MEI-2, binds MEI-1 in vitro; F47G4.5 might thus be an alternative ligand of MEI-1 in vivo.
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure                                                                          

T05E7.5 T05E7.5 P W All gene names: T05E7.5; 1G778; CE13239; NM_059386; WBGene00020261; WP:CE13239
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Cell                                  
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

ZK546.14 ZK546.14 P W All gene names: ZK546.14; ZK546.14a.1; ZK546.14a.2; ZK546.14b.1; ZK546.14b.2; 2F234; CE02914; CE33503; WBGene00022765; WP:CE02914; WP:CE33503
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004,                               
                                              oogenesis enriched genes, Reinke et al 2004, wt herm vs                            
                                              wt male enriched gen, Romagnolo et al 2002  Fig3b Cell                             
                                              Structure, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated