GuhaThakurta et al 2002 T1 upregu on heat stress, 28 genes

Gene list file name:GuhaThakurta2002.T1_upregu_on_heatstress.txt
Type of gene identifier:MA primer pair (sjj)
Description:GuhaThakurta et al 2002 Table1: genes upregulated on heat stress  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C12C8.1 C12C8.1 P W All gene names: hsp-70; C12C8.1; 1J898; CE08110; NM_060084; WBGene00002026; WP:CE08110 WormBase description: hsp-70 encodes a member of the hsp70 family. WormBase CDS description: heat shock protein 70
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 heat shock,                               
                                              GuhaThakurta et al 2002  T1 upregu on heat stress,                                 
                                              Jones et al 2001  Dauer specific genes P<0.05, Kwon et                             
                                              al 2004  T1 Class1 rapid-induction Ethanol, Lund et al                             
                                              2002 Aging time course Fig2C heatshock, Lund et al 2002                            
                                               Fig1 aging-regulated genes, Romagnolo et al 2002                                  
                                              Fig2a heat shock, Shen et al 2005  T1 hif-1indepen                                 
                                              hypoxia, ViswanathanM et al 2005  S2 UPR genes,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  Fig6A Ethanol HS, Wang et al                              
                                              2003  S8 SAGE genes in the dauer exit, Wang et al 2003                             
                                              S7 SAGE genes in the dataset                                                       

C25D7.1 C25D7.1 P W All gene names: C25D7.1; 5P516; CE08387; WBGene00007714; WP:CE08387
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, list of                                 
                                              genes in cluster D, Reinke et al 2004, shared sperm,                               
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C25F9.2 C25F9.2 P W All gene names: C25F9.2; 5T899; CE17467; WBGene00007723; WP:CE17467
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, ViswanathanM et al 2005  S2 daf-16                                    
                                              Resveratrol                                                                        

C30C11.4 C30C11.4 P W All gene names: C30C11.4; C30C11.4.1; C30C11.4.2; 3J534; CE00103; WBGene00016250; WP:CE00103 WormBase description: Msi3p
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Kwon et al 2004 T1 late-induction                                     
                                              Ethanol-response, Lund et al 2002 Aging time course                                
                                              Fig2C heatshock, McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Romagnolo et al 2002                             
                                              Fig2a heat shock, ViswanathanM et al 2005  S2 sir-2.1                              
                                              regulated, ViswanathanM et al 2005  Fig6A Ethanol HS                               

C50F7.5 C50F7.5 P W All gene names: C50F7.5; 4I491; CE04243; WBGene00016845; WP:CE04243
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Murphy et al 2003  Fig2 Class1 elongate                               
                                              lifespan                                                                           

D2013.9 D2013.9 P W All gene names: D2013.9; D2013.9.1; D2013.9.2; 2J631; CE01535; WBGene00008405; WP:CE01535
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, McCarroll et al 2004  SFig1-4 conserved w/                            
                                              Drosoph, Reinke et al 2004, wt herm vs wt male enriched                            
                                              gen, ViswanathanM et al 2005  S2 sir-2.1 regulated                                 

F08G2.5 F08G2.5 P W All gene names: F08G2.5; 2O122; CE19777; WBGene00008577; WP:CE19777
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Jones et al 2001  Dauer specific genes                                
                                              P<0.05, Kwon et al 2004 T1 late-induction                                          
                                              Ethanol-response, ViswanathanM et al 2005  Fig6A                                   
                                              Ethanol HS, Wang et al 2003  S7 SAGE genes in the                                  
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

F09B9.1 F09B9.1 P W All gene names: F09B9.1; CE15758; WBGene00008602; WP:CE15758; XK758
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Jiang et al 2001  Fig1 male-enriched                                  
                                              neuronal, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster B                               

F30F8.4 F30F8.4 P W All gene names: F30F8.4; WBGene00009273
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F33H12.6 F33H12.6 P W All gene names: F33H12.6; 2C878; CE17043; WBGene00018020; WP:CE17043
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Romagnolo et al 2002  Fig3b Unkown,                                   
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F41C3.2 F41C3.2 P W All gene names: F41C3.2; 2F41; CE39500; WBGene00018268; WP:CE39500 WormBase description: Sodium/phosphate transporter protein
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Romagnolo et al 2002  Fig3b Transporters,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F44E5.4 F44E5.4 P W All gene names: F44E5.4; F44E5.4.1; F44E5.4.2; 2M48; CE18679; WBGene00009691; WP:CE18679 WormBase description: Heat shock hsp70 proteins
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 heat shock,                               
                                              GuhaThakurta et al 2002  T1 upregu on heat stress, Lund                            
                                              et al 2002 Aging time course Fig2C heatshock, Reinke et                            
                                              al 2004, list of genes in cluster order, Reinke et al                              
                                              2004, list of genes in cluster B, Romagnolo et al 2002                             
                                              Fig2a heat shock, Shen et al 2005  T1 hif-1indepen                                 
                                              hypoxia, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F44E5.5 F44E5.5 P W All gene names: F44E5.5; F44E5.5.1; F44E5.5.2; 2M51; WBGene00009692 WormBase description: Heat shock hsp70 proteins
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 heat shock,                               
                                              GuhaThakurta et al 2002  T1 upregu on heat stress, Lund                            
                                              et al 2002 Aging time course Fig2C heatshock, Reinke et                            
                                              al 2004, list of genes in cluster order, Reinke et al                              
                                              2004, list of genes in cluster B, Romagnolo et al 2002                             
                                              Fig2a heat shock, Shen et al 2005  T1 hif-1indepen                                 
                                              hypoxia, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F53A9.2 F53A9.2 P W All gene names: F53A9.2; CE02762; WBGene00018725; WP:CE02762; XJ329
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Reinke et al 2004, GO categories, Reinke                              
                                              et al 2004, IVb male soma enriched genes                                           

F55A12.9 F55A12.9 P W All gene names: pqn-44; F55A12.9; F55A12.9d.1; F55A12.9d.2; F55A12.9d.3; F55A12.9d.4; F55A12.9d.5; 1F942; CE08345; CE26925; CE30809; CE33399; NM_059179; NM_059180; NM_170865; NM_182025; WBGene00004131; WP:CE08345; WP:CE26925; WP:CE30809; WP:CE33399 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, ViswanathanM et al 2005  S2 daf-16                                    
                                              Resveratrol                                                                        

F58E10.4 F58E10.4 P W All gene names: aip-1; F58E10.4; 5O493; CE18786; NM_074078; WBGene00000097; WP:CE18786 WormBase description: aip-1 encodes an AN-1-like zinc finger-containing protein homologous to arsenite-inducible RNA-associated protein (AIRAP), conserved among C. elegans, Drosophila, and mammals; like AIRAP itself, AIP-1 protects cells from arsenite toxicity; AIP-1 is a predicted RNA binding protein that may function in ubiquitin-mediated proteolysis following aresenite treatment; AIP-1 does not appear to be essential for viability, but is expressed at high levels in hypodermal and intestinal cells following such treatment.
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, McCarroll et al 2004  SFig1-4 conserved w/                            
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Zhang et al 2002, T1 mec-3 dependent genes                                         

H14N18.1 H14N18.1 P W All gene names: unc-23; vab-4; H14N18.1; H14N18.1b.1; H14N18.1b.2; 5J419; CE17973; CE33124; CE37777; NM_072906; NM_182342; WBGene00006760; WP:CE17973; WP:CE33124; WP:CE37777
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, McCarroll et al 2004  SFig1-4 conserved w/                            
                                              Drosoph, Murphy et al 2003  Fig2 Class1 elongate                                   
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Roy et al 2002  S3 muscle genes, ViswanathanM et al                                
                                              2005  S2 sir-2.1 regulated                                                         

M01B12.1 M01B12.1 P W All gene names: M01B12.1; 1D655; WBGene00019696
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress                                                                        

M05D6.1 M05D6.1 P W All gene names: M05D6.1; 2I764; CE03499; WBGene00010874; WP:CE03499 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Jones et al 2001  Non dauer genes P<0.05,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, spermatogenesis enriched genes,                                 
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, wt                            
                                              males vs glp4 male enriched , Reinke et al 2004, GO                                
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              D, Reinke et al 2004, shared sperm, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated                                                         

R03D7.2 R03D7.2 P W All gene names: R03D7.2; 2L224; CE01610; WBGene00010989; WP:CE01610 WormBase description: helicase domain
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Reinke et al 2004, intrinsic, Reinke et al                            
                                              2004, wt vs glp-4 enriched genes, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol                                                        

R07B1.4 R07B1.4 P W All gene names: gst-36; R07B1.4; CE30562; NM_077251; WBGene00001784; WP:CE30562; XK480 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T27A3.4 T27A3.4 P W All gene names: T27A3.4; 1G675; CE14223; WBGene00020840; WP:CE14223
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

T27E4.2 T27E4.2 P W All gene names: hsp-16.11; T27E4.2; 5J571; NM_072956; WBGene00002017 WormBase description: hsp-16.11 encodes a 16-kD heat shock protein (HSP) that is a member of the hsp16/hsp20/alphaB-crystallin (HSP16) family of heat shock proteins, and that is identical to the protein encoded by hsp-16.1; hsp-16.11 expression is induced in response to heat shock or other environmental stresses; HSP-16.11 is likely to function as passive ligand temporarily preventing unfolded proteins from aggregating; HSP-16.11 has been shown to interact with intracellular human beta amyloid peptide, a primary component of the extracellular plaques found in Alzheimer's disease. WormBase CDS description: heat shock protein HSP16-1
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 differentially                              
                                              expressed gen, GuhaThakurta et al 2002  T1 upregu on                               
                                              heat stress, Romagnolo et al 2002  Fig2a heat shock,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 UPR genes, ViswanathanM et                             
                                              al 2005  Fig6A Ethanol HS                                                          

T27F2.4 T27F2.4 P W All gene names: T27F2.4; 5M130; CE06522; WBGene00012101; WP:CE06522
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, ViswanathanM et al 2005  Fig6A Ethanol HS                             

T28H11.7 T28H11.7 P W All gene names: T28H11.7; 4F780; CE14380; WBGene00020905; WP:CE14380
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, ViswanathanM et al 2005  S2 daf-16                                   
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

W02D9.10 W02D9.10 P W All gene names: W02D9.10; 1N143; CE14472; WBGene00012216; WP:CE14472
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, Lund et al 2002  Fig4 Mount 15, Reinke et                             
                                              al 2004, list of genes in cluster A, Reinke et al 2004,                            
                                              list of genes in cluster order, Reinke et al 2004, wt                              
                                              herm vs wt herm enriched gen, Reinke et al 2004, IVb                               
                                              male soma enriched genes, Shen et al 2005  T1                                      
                                              hif-1indepen hypoxia, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, ViswanathanM et al 2005  Fig6A                                 
                                              Ethanol HS, Wang et al 2003  S3  genes pass one-way                                
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 Dauer Enriched                                                 

Y38H6C.7 Y38H6C.7 P W All gene names: Y38H6C.7; 5U985; CE19101; WBGene00012620; WP:CE19101
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress                                                                        

ZK1290.5 ZK1290.5 P W All gene names: ZK1290.5; 2H819; CE36068; WBGene00022887; WP:CE36068 WormBase description: Aldo/keto reductase
                                              
Member of lists (Publications lists):
                                              GuhaThakurta et al 2002  T1 upregu on                             
                                              heat stress, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, ViswanathanM et al 2005  Fig6A Ethanol HS