Romagnolo et al 2002 Fig5 genes in let-60 timecour, 34 genes

Gene list file name:Romagnolo2002.Fig5_34genes_in_let-60_timecourse.tx
Type of gene identifier:MA primer pair (sjj)
Description:Romagnolo et al 2002 Fig5 34 genes in let-60 timecourse  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0285.9 B0285.9 P W All gene names: ckb-2; B0285.9; 3F459; CE33591; NM_065479; WBGene00000512; WP:CE33591 WormBase description: choline kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Romagnolo et al 2002  Fig3b signaling, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol, Wang et al 2003  S3                                
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Early                                
                                              genes, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

B0546.4 B0546.4 P W All gene names: B0546.4; 4E148; CE16795; CE33354; WBGene00015251; WP:CE16795; WP:CE33354
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15,                                   
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order, Romagnolo                              
                                              et al 2002  Fig3b Unkown, Romagnolo et al 2002 Fig5                                
                                              genes in let-60 timecour, ViswanathanM et al 2005  S2                              
                                              sir-2.1 regulated, Wang et al 2003  S5 genes common to                             
                                              feeding ANOVA, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA                                                                              

C01A2.1 C01A2.1 P W All gene names: C01A2.1; 1N998; CE07783; WBGene00007213; WP:CE07783
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002 Fig5 genes in                                
                                              let-60 timecour, Romagnolo et al 2002  Fig3b secretion,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C12D5.7 C12D5.7 P W All gene names: cyp-33A1; C12D5.7; 5I160; CE06809; NM_072587; WBGene00015709; WP:CE06809 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Kwon et al 2004 T1 late-induction                                          
                                              Ethanol-response, Menzel et al 2001  T3 CYP genes,                                 
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Romagnolo et al 2002  Fig3b Oxidation                                              

C18F10.4 C18F10.4 P W All gene names: srg-1; C18F10.4; 3H344; CE33270; NM_065965; WBGene00005159; WP:CE33270 WormBase description: 7TM chemoreceptor, srg family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002 Fig5 genes in                                
                                              let-60 timecour, Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C25H3.10 C25H3.10 P W All gene names: C25H3.10; 2F988; CE27090; CE37612; WBGene00016119; WP:CE27090; WP:CE37612
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Kwon et al 2004  T1 late-repression                                        
                                              Ethanol-respon, Reinke et al 2004, list of genes in                                
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Romagnolo et al 2002  Fig3b Unkown, Romagnolo et                            
                                              al 2002 Fig5 genes in let-60 timecour, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated, Wang et al 2003  S3  genes pass                             
                                              one-way ANOVA, Wang et al 2003  S8 SAGE genes in the                               
                                              dauer exit, Wang et al 2003  S7 SAGE genes in the                                  
                                              dataset, Wang et al 2003  S4 Dauer Enriched, Wang et al                            
                                              2003  S4 genes pass two-wayANOVA P0                                                

C32F10.4 C32F10.4 P W All gene names: C32F10.4; C32F10.4.1; C32F10.4.2; 1G384; CE08541; WBGene00016332; WP:CE08541
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

E02H4.4 E02H4.4 P W All gene names: E02H4.4; CE05550; WBGene00008462; WP:CE05550; XO879
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, Romagnolo et al 2002  Fig3b Unkown, Romagnolo et                            
                                              al 2002 Fig5 genes in let-60 timecour, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

F09D12.2 F09D12.2 P W All gene names: F09D12.2; 4E208; CE16972; WBGene00017281; WP:CE16972 WormBase description: F09D12.2 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; F09D12.2 has no clear orthologs in other organisms.
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour                                 

F16B12.1 F16B12.1 P W All gene names: F16B12.1; CE35488; WBGene00008879; WP:CE35488; XO707 WormBase description: C1R/C1S-like domain
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F22B7.9 F22B7.9 P W All gene names: F22B7.9; 3J742; CE29771; WBGene00017698; WP:CE29771
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Kwon et al 2004  T1 late-repression                                        
                                              Ethanol-respon, Lund et al 2002  Fig4 Mount 15,                                    
                                              Romagnolo et al 2002  Fig3b Unkown, Romagnolo et al                                
                                              2002 Fig5 genes in let-60 timecour, Wang et al 2003  S3                            
                                               genes pass one-way ANOVA, Wang et al 2003  S8 SAGE                                
                                              genes in the dauer exit, Wang et al 2003  S7 SAGE genes                            
                                              in the dataset, Wang et al 2003  S4 Dauer Enriched,                                
                                              Wang et al 2003  S4 genes pass two-wayANOVA P0                                     

F30A10.4 F30A10.4 P W All gene names: F30A10.4; 1K61; CE09805; WBGene00009263; WP:CE09805 WormBase description: acetylglucosaminyltransferase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002 Fig5 genes in                                
                                              let-60 timecour, Romagnolo et al 2002  Fig3b                                       
                                              Metabolism, ViswanathanM et al 2005  S2 daf-16                                     
                                              Resveratrol                                                                        

F35E2.7 F35E2.7 P W All gene names: F35E2.7; 1M306; CE17776; WBGene00009414; WP:CE17776
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002 Fig5 genes in                                
                                              let-60 timecour, Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F36H12.14 F36H12.14 P W All gene names: F36H12.14; 4G28; CE09984; WBGene00018127; WP:CE09984
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, spermatogenesis                                
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, shared sperm, Romagnolo et al 2002  Fig3b                                 
                                              Unkown, Romagnolo et al 2002 Fig5 genes in let-60                                  
                                              timecour, ViswanathanM et al 2005  S2 sir-2.1 regulated                            

F38E1.2 F38E1.2 P W All gene names: F38E1.2; 5I861; WBGene00018177
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F40F4.1 F40F4.1 P W All gene names: fbxb-71; F40F4.1; CE04531; WBGene00018236; WP:CE04531; XD883 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Romagnolo et al 2002  Fig3b Unkown, Romagnolo                            
                                              et al 2002 Fig5 genes in let-60 timecour, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

F45D3.4 F45D3.4 P W All gene names: F45D3.4; 5N32; CE10474; CE38518; WBGene00009724; WP:CE10474; WP:CE38518
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Romagnolo et al 2002  Fig3b Unkown,                             
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Shen et al 2005  T1 hif-1indepen hypoxia, ViswanathanM                             
                                              et al 2005  S2 sir-2.1 regulated                                                   

F55G11.1 F55G11.1 P W All gene names: F55G11.1; 4N708; CE19899; WBGene00010122; WP:CE19899
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F56H6.1 F56H6.1 P W All gene names: F56H6.1; 1M863; CE25910; WBGene00010162; WP:CE25910
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F58E10.7 F58E10.7 P W All gene names: F58E10.7; 5O473; CE18789; WBGene00010262; WP:CE18789
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Romagnolo et al 2002  Fig3b Unkown,                                
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

K01A2.2 K01A2.2 P W All gene names: far-7; K01A2.2; K01A2.2a.1; K01A2.2a.2; 2A611; CE19511; CE33412; NM_061307; NM_182191; WBGene00001391; WP:CE19511; WP:CE33412
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Romagnolo et al 2002  Fig3b Unkown,                             
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

K02E7.3 K02E7.3 P W All gene names: K02E7.3; 2B367; CE11626; WBGene00019308; WP:CE11626
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Romagnolo et al 2002                            
                                              Fig5 genes in let-60 timecour, Romagnolo et al 2002                                
                                              Fig3b Protein Synthesis, ViswanathanM et al 2005  S2                               
                                              daf-16 Resveratrol                                                                 

K03B8.1 K03B8.1 P W All gene names: nas-16; K03B8.1; 5L871; CE06075; NM_073488; WBGene00003535; WP:CE06075 WormBase description: zinc metalloprotease
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Proteases,                            
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

K03D3.9 K03D3.9 P W All gene names: K03D3.9; WBGene00043407
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002 Fig5 genes in                                
                                              let-60 timecour, Romagnolo et al 2002  Fig3b signaling                             

M110.7 M110.7 P W All gene names: M110.7; 2I527; CE03510; WBGene00010915; WP:CE03510 WormBase description: Uncharacterized protein family UPF0028
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, spermatogenesis enriched genes, Reinke et                              
                                              al 2004, wt herm vs wt herm enriched gen, Reinke et al                             
                                              2004, fem3 enriched genes, Reinke et al 2004, wt vs                                
                                              glp-4 enriched genes, Reinke et al 2004, GO categories,                            
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Romagnolo et al 2002  Fig3b others, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated                                                         

R02F2.5 R02F2.5 P W All gene names: R02F2.5; 3G569; CE00684; WBGene00019834; WP:CE00684
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes, Romagnolo et al 2002  Fig3b                             
                                              Unkown, Romagnolo et al 2002 Fig5 genes in let-60                                  
                                              timecour                                                                           

R07C3.1 R07C3.1 P W All gene names: clec-43; R07C3.1; 2B235; CE38627; WBGene00019917; WP:CE38627 WormBase description: 7TM chemoreceptor, clec family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002 Fig5 genes in                                
                                              let-60 timecour, Romagnolo et al 2002  Fig3b Adhesion,                             
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T19H12.1 T19H12.1 P W All gene names: ugt-9; T19H12.1; 5F375; CE13752; WBGene00020587; WP:CE13752 WormBase description: 7TM chemoreceptor, ugt family
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, fem3 enriched genes,                             
                                              Reinke et al 2004, list of genes in cluster C, Reinke                              
                                              et al 2004, mixed sperm soma, Reinke et al 2004, GO                                
                                              categories, Romagnolo et al 2002 Fig5 genes in let-60                              
                                              timecour, Romagnolo et al 2002  Fig3b Detoxification,                              
                                              Wang et al 2003  S4 TransientList, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

T21B4.9 T21B4.9 P W All gene names: srh-70; T21B4.9; 2M808; CE16434; NM_064272; WBGene00005291; WP:CE16434 WormBase description: 7TM receptor
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y62H9A.14 Y62H9A.14 P W All gene names: Y62H9A.14; CE35695; WBGene00013402; WP:CE35695; XM539
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour                                 

ZC395.5 ZC395.5 P W All gene names: ZC395.5; 3G357; CE01441; WBGene00022597; WP:CE01441
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Romagnolo et al 2002  Fig3b Unkown, Romagnolo et                            
                                              al 2002 Fig5 genes in let-60 timecour, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S3                                 
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                                    
                                              Enriched                                                                           

ZK669.3 ZK669.3 P W All gene names: ZK669.3; 2I235; CE01114; WBGene00014053; WP:CE01114
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Romagnolo et al 2002  Fig3b Unkown,                                  
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour                                 

ZK673.6 ZK673.6 P W All gene names: ZK673.6; 2K754; CE01718; WBGene00014062; WP:CE01718
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, list of genes in cluster D, Reinke et al 2004,                            
                                              shared sperm, Romagnolo et al 2002  Fig3b Unkown,                                  
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK971.1 ZK971.1 P W All gene names: ZK971.1; 2K568; CE02408; WBGene00014175; WP:CE02408
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Unkown,                               
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Wang et al 2003  S5 genes common to feeding ANOVA, Wang                            
                                              et al 2003  S3  genes pass one-way ANOVA