Romagnolo et al 2002 Fig3b others, 31 genes

Gene list file name:Romagnolo2002.Fig3b_31others.txt
Type of gene identifier:MA primer pair (sjj)
Description:Romagnolo et al 2002 Fig3b 31 others  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C06A12.5 C06A12.5 P W All gene names: C06A12.5; 4S374; CE18489; WBGene00007358; WP:CE18489
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Romagnolo et al 2002  Fig3b others,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C16C10.6 C16C10.6 P W All gene names: C16C10.6; 3F258; CE01497; WBGene00007627; WP:CE01497
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, fem1 enriched                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, list of genes in cluster E, Romagnolo et al                               
                                              2002  Fig3b others, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

C27A2.4 C27A2.4 P W All gene names: C27A2.4; 2F348; CE39326; WBGene00016152; WP:CE39326 WormBase description: acid phosphotase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b others, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

C29F7.6 C29F7.6 P W All gene names: C29F7.6; CE08447; WBGene00007813; WP:CE08447; XO59
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C34B7.2 C34B7.2 P W All gene names: C34B7.2; 1I917; CE32316; WBGene00007912; WP:CE32316 WormBase description: Yeast hypothetical protein YNOD like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, list of genes in cluster E,                                
                                              Romagnolo et al 2002  Fig3b others, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated                                                         

C39E9.6 C39E9.6 P W All gene names: C39E9.6; 4N837; CE05389; WBGene00008030; WP:CE05389 WormBase description: testis-specific protein TPX-1 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              herm enriched gen, Reinke et al 2004, IVb male soma                                
                                              enriched genes, Romagnolo et al 2002  Fig3b others,                                
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C50F2.6 C50F2.6 P W All gene names: dao-8; fkb-5; C50F2.6; C50F2.6a.1; C50F2.6a.2; 1E466; CE08912; CE27878; NM_058856; NM_058857; WBGene00001430; WP:CE08912; WP:CE27878 WormBase description: fkb-5 encodes a homolog of human FK506 binding protein 9.
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta repressed,                              
                                              Romagnolo et al 2002  Fig3b others, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S4                                    
                                              Climbing, Wang et al 2003  S3  genes pass one-way                                  
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

F13G3.4 F13G3.4 P W All gene names: dylt-1; F13G3.4; 1H876; CE17659; NM_059662; WBGene00008764; WP:CE17659
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Romagnolo et al 2002  Fig3b others,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F16F9.4 F16F9.4 P W All gene names: F16F9.4; CE09443; WBGene00017515; WP:CE09443; XJ80 WormBase description: lipase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

F35G2.4 F35G2.4 P W All gene names: phy-2; F35G2.4; F35G2.4.1; F35G2.4.2; 4M976; CE05811; NM_069916; WBGene00004025; WP:CE05811 WormBase description: prolyl 4-hydroxylase alpha subunit
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, Romagnolo et al 2002  Fig3b others                                  

F36H1.1 F36H1.1 P W All gene names: fkb-1; F36H1.1; 4L801; CE05813; NM_069655; WBGene00001426; WP:CE05813 WormBase description: fkb-1 encodes a homolog of mouse FK506-binding protein 2. WormBase CDS description: FK506-binding protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b others,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F55F1.3 F55F1.1 P W All gene names: F55F1.3; CE30148; WBGene00018889; WP:CE30148
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

F56D1.6 F56D1.6 P W All gene names: cex-1; F56D1.6; 2F739; CE01974; NM_062633; WBGene00018962; WBGene00023407; WP:CE01974 WormBase description: calcium binding protein (weak)
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Lund et al 2002  Fig4 Mount 15, McCarroll et al                             
                                              2004  SFig1-4 conserved w/ Drosoph, Romagnolo et al                                
                                              2002  Fig3b others, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0,                             
                                              Wang et al 2003  S4 Dauer Enriched                                                 

F58D2.1 F58D2.1 P W All gene names: F58D2.1; 4N951; CE18782; WBGene00010240; WP:CE18782 WormBase description: C.elegans ZYG-11 protein like
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

F59E10.2 F59E10.2 P W All gene names: cyn-4; cyp-4; mog-6; F59E10.2; 2L162; CE01596; NM_063936; WBGene00000880; WP:CE01596 WormBase description: cyp-4 encodes a peptidyl-propyl cis-trans isomerase of the cyclophilin family that is required for sexual differentiation of germ cells in hermaphrodites and affects body-wall muscle cell development; expression is most abundant in early larval stages and is observed exclusively in body- wall striated muscle cells. WormBase CDS description: cyclophilin
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              others, ViswanathanM et al 2005  S2 daf-16 Resveratrol                             

K03B4.3 K03B4.3 P W All gene names: TAF-11; taf-10; K03B4.3; 5F167; CE07323; CE28580; NM_071859; NM_071860; WBGene00006392; WP:CE07323; WP:CE28580
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, intrinsic,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Romagnolo                             
                                              et al 2002  Fig3b others, ViswanathanM et al 2005  S2                              
                                              sir-2.1 regulated                                                                  

K07C5.3 K07C5.3 P W All gene names: K07C5.3; 5K825; CE06113; WBGene00010626; WP:CE06113 WormBase description: DNA ligase like domain
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

M110.7 M110.7 P W All gene names: M110.7; 2I527; CE03510; WBGene00010915; WP:CE03510 WormBase description: Uncharacterized protein family UPF0028
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm sperm, Reinke                             
                                              et al 2004, spermatogenesis enriched genes, Reinke et                              
                                              al 2004, wt herm vs wt herm enriched gen, Reinke et al                             
                                              2004, fem3 enriched genes, Reinke et al 2004, wt vs                                
                                              glp-4 enriched genes, Reinke et al 2004, GO categories,                            
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Romagnolo et al 2002  Fig3b others, ViswanathanM et al                             
                                              2005  S2 sir-2.1 regulated                                                         

M142.1 M142.1 P W All gene names: unc-119; M142.1; 3L997; CE06203; NM_066998; WBGene00006843; WP:CE06203 WormBase description: unc-119 encodes a novel protein that is highly conserved amongst metazoans; unc-119 activity is required for proper development of the nervous system, including axonal branching and fasciculation, and hence, for normal movement, chemosensation, and feeding; unc-119 is expressed pan-neuronally beginning in the early embryo (~60 cells) and continuing through adulthood; although the molecular function of UNC-119 is not yet known, human UNC119, which can rescue C. elegans unc-119 mutant animals, is reported to function as a receptor-associated activator of signal transduction; thus, UNC-119 may be part of a signal transduction pathway that mediates axonal patterning in response to external developmental cues.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              others, ViswanathanM et al 2005  S2 sir-2.1 regulated                              

T06G6.9 T06G6.9 P W All gene names: vbp-1; T06G6.9; 1N321; CE13349; NM_060827; WBGene00006889; WP:CE13349 WormBase description: Human VHL binding protein like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b others,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

T09A5.1 T09A5.1 P W All gene names: cex-2; T09A5.1; 2I120; CE35904; CE35905; NM_063244; WBGene00011632; WBGene00023408; WP:CE35904; WP:CE35905 WormBase description: calcium binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Romagnolo et al 2002  Fig3b others, ViswanathanM                            
                                              et al 2005  S2 sir-2.1 regulated                                                   

T19C9.7 T19C9.7 P W All gene names: T19C9.7; WBGene00011843
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T21B6.2 T21B6.2 P W All gene names: T21B6.2; CE31620; WBGene00011879; WP:CE31620; XL556 WormBase description: histidine acid phosphatase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

T23B12.9 T23B12.9 P W All gene names: T23B12.9; 5I956; CE14042; WBGene00020723; WP:CE14042
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

T25D3.2 T25D3.2 P W All gene names: T25D3.2; 2A446; CE19599; WBGene00020796; WP:CE19599
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, wt herm vs wt                             
                                              male enriched gen, Romagnolo et al 2002  Fig3b others,                             
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T27F7.3 T27F7.3 P W All gene names: PIG-B; T27F7.3; T27F7.3b.1; T27F7.3b.2; 2F282; CE27214; CE30458; WBGene00020868; WP:CE27214; WP:CE30458
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

W06B11.4 W06B11.4 P W All gene names: hog-1; W06B11.4; CE35048; NM_076581; WBGene00001984; WP:CE35048; XG466 WormBase description: warthog
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, Romagnolo et al 2002  Fig3b others,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

Y37A1B.13 Y37A1B.13 P W All gene names: dyt-1; tor-2; Y37A1B.13; 4O746; CE19083; NM_070282; WBGene00006598; WP:CE19083
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

Y43F4A.2 Y43F4A.2 P W All gene names: Y43F4A.2; WBGene00012797
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b others                                

Y47D3B.10 Y47D3B.10 P W All gene names: dpy-18; phy-1; T28D6.1; Y47D3B.10; Y47D3B.10.1; Y47D3B.10.2; Y47D3B.10.3; Y47D3B.10.4; 3M464; CE20261; NM_067063; WBGene00001077; WP:CE20261 WormBase description: An alpha subunit of prolyl-4-hydroxylase which is a procollagen modifying enzyme required for exoskeleton formation, morphogenesis and maintenance of body shape; it is expressed throughout the hypodermis and certain head and posterior neurons. WormBase CDS description: PROLYL 4-HYDROXYLASE ALPHA SUBUNIT PRECURSOR (EC 1.14.11.2)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Romagnolo et al 2002  Fig3b others,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

Y48C3A.14 Y48C3A.R P W All gene names: Y48C3A.14; 2N691; CE32972; WBGene00012995; WP:CE32972
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              others, ViswanathanM et al 2005  S2 sir-2.1 regulated