Kwon et al 2004 T1 Class1 rapid-induction Ethanol, 7 genes

Gene list file name:Kwon2004.T1_Class1_rapid-induction_Ethanol-respons
Type of gene identifier:MA primer pair (sjj)
Description:Kwon et al 2004 Table1: Class1 rapid-induction Ethanol-response  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0280.12 B0280.12 P W All gene names: glr-2; B0280.12; 3I228; CE31400; CE33547; WBGene00001613; WP:CE31400; WP:CE33547 WormBase description: glr-2 encodes an AMPA (non-NMDA)-type ionotropic glutamate receptor subunit; GLR-2 activity is required for mediating the behavioral response to light nose touch and for regulating the frequency with which animals change locomotory direction in response to sensory cues such as food; GLR-2 and GLR-1, a second AMPA-type ionotropic glutamate receptor, can interact to form functional heteromeric channels; GLR-2 is expressed in many neurons, including four of the five pairs of command interneurons that are required for locomotory control.
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 Class1                                        
                                              rapid-induction Ethanol, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated                                                                  

C12C8.1 C12C8.1 P W All gene names: hsp-70; C12C8.1; 1J898; CE08110; NM_060084; WBGene00002026; WP:CE08110 WormBase description: hsp-70 encodes a member of the hsp70 family. WormBase CDS description: heat shock protein 70
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 heat shock,                               
                                              GuhaThakurta et al 2002  T1 upregu on heat stress,                                 
                                              Jones et al 2001  Dauer specific genes P<0.05, Kwon et                             
                                              al 2004  T1 Class1 rapid-induction Ethanol, Lund et al                             
                                              2002 Aging time course Fig2C heatshock, Lund et al 2002                            
                                               Fig1 aging-regulated genes, Romagnolo et al 2002                                  
                                              Fig2a heat shock, Shen et al 2005  T1 hif-1indepen                                 
                                              hypoxia, ViswanathanM et al 2005  S2 UPR genes,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  Fig6A Ethanol HS, Wang et al                              
                                              2003  S8 SAGE genes in the dauer exit, Wang et al 2003                             
                                              S7 SAGE genes in the dataset                                                       

F08H9.3 F08H9.3 P W All gene names: F08H9.3; 5O942; CE09267; WBGene00008591; WP:CE09267 WormBase description: F08H9.3 encodes a heat shock protein (HSP) of the HSP16 class; unlike most HSP16s in C. elegans, it is specifically expressed in a particular tissue (the larval pharynx and the anterior adult pharynx), and its expression is not strongly induced by heat shock; however, F08H9.3 expression is increased by heat shock (with adult expression in the full pharynx) and probably aids heat shock resistance, since F08H9.3(RNAi) animals have sensitivity to heat shock that is sporadically higher than normal; in general, HSP16 proteins are thought to act as passive ligands for unfolded proteins that keep them safe from aggregation until the proteins can be refolded by a large (ATP-consuming) HSP. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 Class1                                        
                                              rapid-induction Ethanol, Lund et al 2002 Aging time                                
                                              course Fig2C heatshock, Lund et al 2002  Fig4 Mount 15,                            
                                              Romagnolo et al 2002  Fig2a heat shock                                             

F08H9.4 F08H9.4 P W All gene names: F08H9.4; 5O946; CE09268; WBGene00008592; WP:CE09268 WormBase description: F08H9.4 encodes a heat shock protein (HSP) of the HSP16 class; unlike most HSP16s in C. elegans, it is specifically expressed in a particular tissue (the excretory canal and ventral nerve-cord neurons), and its expression is only mildly induced by heat shock; however, F08H9.4 expression is increased by heat shock, is induced in a new tissue type (intestine) by heat shock, and probably aids heat shock resistance, since F08H9.4(RNAi) animals die as embryos in heat shock at a higher rate than normal; in general, HSP16 proteins are thought to act as passive ligands for unfolded proteins that keep them safe from aggregation until the proteins can be refolded by a large (ATP-consuming) HSP. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Kwon et al 2004  T1 Class1 rapid-induction                                 
                                              Ethanol, Lund et al 2002 Aging time course Fig2C                                   
                                              heatshock, Romagnolo et al 2002  Fig2a heat shock, Shen                            
                                              et al 2005  T1 hif-1indepen hypoxia, Wang et al 2003                               
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S6                               
                                              removed genes of contamination, Wang et al 2003  S7                                
                                              SAGE genes in the dataset                                                          

F26G1.2 F26G1.2 P W All gene names: F26G1.2; 2F53; CE02694; CE39356; WBGene00017838; WP:CE02694; WP:CE39356
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 Class1                                        
                                              rapid-induction Ethanol, ViswanathanM et al 2005  S2                               
                                              sir-2.1 regulated, Wang et al 2003  S3  genes pass                                 
                                              one-way ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang                            
                                              et al 2003  S4 genes pass two-wayANOVA P0                                          

F39F10.1 F39F10.1 P W All gene names: F39F10.1; WBGene00043310
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Kwon et al 2004  T1 Class1 rapid-induction                            
                                              Ethanol, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F47G4.3 F47G4.3 P W All gene names: F47G4.3; 1O669; CE18701; WBGene00009824; WP:CE18701 WormBase description: F47G4.3 encodes one of two C. elegans glycerol 3-phosphate dehydrogenases; although loss of F47G4.3 activity via large-scale RNAi screens results in no obvious defects, F47G4.3 mRNA expression is upregulated in response to hypertonicity, suggesting that the F47G4.3 gene product does play a role in osmotic stress adaptation in C. elegans. WormBase CDS description: NAD-dependent glycerol-3-phosphate dehydrogenase
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 Class1                                        
                                              rapid-induction Ethanol, Reinke et al 2004, wt herm vs                             
                                              wt herm enriched gen, ViswanathanM et al 2005  Fig6A                               
                                              Ethanol Paraquat