Bishop et al 2004 T4 57 vhl-1 depend hif-1 indep, 57 genes

Gene list file name:Bishop2004.T4_57_VHL-1depend_HIF-1indep.txt
Type of gene identifier:Cosmid name
Description:Bishop et al 2004 Table4: 57 vhl-1 depend hif-1 independent
genes  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C01B4.6 C01B4.6 P W All gene names: C01B4.6; C01B4.H; 5C981; CE20475; WBGene00015270; WP:CE20475 WormBase description: aldose 1-epimerase
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

C01B4.8 C01B4.8 P W All gene names: C01B4.8; C01B4.G; 5C967; CE20477; WBGene00015272; WP:CE20477
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S5 genes common to feeding                             
                                              ANOVA, Wang et al 2003  S3  genes pass one-way ANOVA                               

C02B8.4 hlh-8 P W All gene names: hlh-8; C02B8.4; CE24777; NM_076966; WBGene00001953; WP:CE24777; XI737 WormBase description: The hlh-8 gene encodes a helix-loop-helix protein required for normal muscle development, and hence for normal defecation and egg-laying. WormBase CDS description: MYC family of helix-loop-helix transcription factors
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol                                                                        

C24A8.4 C24A8.4 P W All gene names: tag-306; C24A8.4; CE39226; WBGene00016038; WP:CE39226; XE950
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep                                                                        

C39H7.4 C39H7.4 P W All gene names: C39H7.4; 4G376; CE06943; WBGene00016542; WP:CE06943
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

C42D4.3 C42D4.3 P W All gene names: C42D4.3; 4H945; CE04191; WBGene00016596; WP:CE04191
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C45B2.2 C45B2.2 P W All gene names: C45B2.2; CE02552; WBGene00016659; WP:CE02552; XG703
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jones et al 2001  Non dauer genes P<0.05,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, wt herm vs wt herm enriched gen,                                
                                              Reinke et al 2004, list of genes in cluster C,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

C46H11.7 C46H11.7 P W All gene names: C46H11.7; 1F610; CE08789; WBGene00016731; WP:CE08789
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

F11C1.3 F11C1.3 P W All gene names: F11C1.3; CE33994; WBGene00008692; WP:CE33994; XN603 WormBase description: membrane glycoprotein
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, herm soma enriched                                 
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F17E9.11 F17E9.11 P W All gene names: lys-10; F17E9.11; 4J95; CE07076; NM_069004; WBGene00003099; WP:CE07076
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

F22D6.10 F22D6.10 P W All gene names: col-60; F22D6.10; 1H683; CE05691; NM_059612; WBGene00000636; WP:CE05691 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Kwon et al 2004  T1 late-repression                                   
                                              Ethanol-respon, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F23A7.5 F23A7.5 P W All gene names: F23A7.5; CE34175; WBGene00009070; WP:CE34175; XQ849
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep                                                                        

F27C8.4 F27C8.4 P W All gene names: spp-18; F27C8.4; 4K359; CE03269; NM_069303; WBGene00005003; WP:CE03269
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Kwon et al 2004  T1 late-repression                                   
                                              Ethanol-respon, Reinke et al 2004, herm soma enriched                              
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

F35E8.8 F35E8.8 P W All gene names: gst-38; F35E8.8; 5Q396; CE15958; NM_074582; WBGene00001786; WP:CE15958 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ReichertK et al 2005 T1 xenobiotic induced                            
                                              GSTs, Reinke et al 2004, list of genes in cluster                                  
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F36D3.9 F36D3.9 P W All gene names: cpr-2; F36D3.9; 5R14; CE30347; CPROT/2; NM_074785; WBGene00000782; WP:CE30347 WormBase description: cysteine protease
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Golden et al 2004, N2 vs daf-2 different                              
                                              genes at , Golden et al 2004, N2 vs daf-2 age different                            
                                              gene, Golden et al 2004, N2 differentially expressed                               
                                              gen, Jones et al 2001  T3 20 most abundant Dauer, Lund                             
                                              et al 2002  Fig1 aging-regulated genes, Murphy et al                               
                                              2003  Fig2 Class1 elongate lifespan, ViswanathanM et al                            
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated, Wang et al 2003  S8 SAGE genes in                            
                                              the dauer exit                                                                     

F38A5.10 F38A5.10 P W All gene names: nspb-4; F38A5.10; 4H361; CE10044; WBGene00018167; WP:CE10044 WormBase description: nspb family
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, wt herm vs wt herm                                 
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F39F10.1 F39F10.1 P W All gene names: F39F10.1; WBGene00043310
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Kwon et al 2004  T1 Class1 rapid-induction                            
                                              Ethanol, ViswanathanM et al 2005  S2 sir-2.1 regulated                             

F44G3.10 F44G3.10 P W All gene names: F44G3.10; 5Q618; CE16041; WBGene00009710; WP:CE16041 WormBase description: F44G3.10 encodes a claudin homolog that may be required for normal cohesion of apical junctions in epithelia; F44G3.10 is worm-specific, with obvious homologs only in C. elegans; F44G3.10 has no obvious function in mass RNAi assays; claudins are integral membrane proteins with four transmembrane sequences that are found in mammalian tight junctions (TJs), induce TJs when transgenically expressed in cells normally lacking them, and can mediate the specific conductance of of specific ions (e.g., magnesium or calcium) through TJs while blocking the flow of water.
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep                                                                        

F56A4.10 F56A4.10 P W All gene names: F56A4.10; 5C940; CE17005; WBGene00018918; WP:CE17005
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep                                                                        

F56A4.2 F56A4.2 P W All gene names: F56A4.2; 5C939; CE17006; WBGene00018910; WP:CE17006
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jones et al 2001  Non dauer genes P<0.05,                             
                                              Murphy et al 2003  Fig2 Class2 shorten lifespan                                    

F56A4.3 F56A4.3 P W All gene names: F56A4.3; 5C927; CE30150; WBGene00018911; WP:CE30150
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

F56A4.7 F56A4.7 P W All gene names: str-267; F56A4.7; 5C924; NM_071271; WBGene00018915 WormBase description: 7TM chemoreceptor, str family
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C                                                                          

F56A4.9 F56A4.9 P W All gene names: F56A4.9; 5C930; CE23778; WBGene00018917; WP:CE23778
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

F56F3.4 F56F3.4 P W All gene names: F56F3.4; 3F561; CE01016; WBGene00010155; WP:CE01016 WormBase description: Ubiquitin family
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jiang et al 2001  Fig1 male-enriched TF,                              
                                              Jones et al 2001  Non dauer genes P<0.05, Reinke et al                             
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, spermatogenesis enriched genes, Reinke et al                                 
                                              2004, fem3 enriched genes, Reinke et al 2004, wt vs                                
                                              glp-4 enriched genes, Reinke et al 2004, wt males vs                               
                                              glp4 male enriched , Reinke et al 2004, list of genes                              
                                              in cluster D, Reinke et al 2004, shared sperm                                      

F58B3.2 F58B3.2 P W All gene names: lys-5; F58B3.2; 4M388; CE06004; NM_069792; WBGene00003094; WP:CE06004
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, herm soma enriched                                 
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated                               

M04C3.1 M04C3.1 P W All gene names: M04C3.1; 5T912; CE18078; CE31972; WBGene00010850; WP:CE18078; WP:CE31972
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, Reinke et al 2004, list of genes in cluster B                               

R01E6.2 R01E6.2 P W All gene names: R01E6.2; CE35593; WBGene00010968; WP:CE35593; XO180
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jones et al 2001  Non dauer genes P<0.05,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster B,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

R13A5.6 R13A5.6 P W All gene names: R13A5.6; 3I654; CE01378; WBGene00020049; WP:CE01378
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T02E9.2 T02E9.2 P W All gene names: grl-7; T02E9.2; T02E9.2a.1; T02E9.2a.2; 5L826; CE13064; CE38539; NM_073481; WBGene00001716; WP:CE13064; WP:CE38539
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S3  genes pass one-way                                 
                                              ANOVA, Wang et al 2003  S4 LateList, Wang et al 2003                               
                                              S4 genes pass two-wayANOVA P0                                                      

T05A10.3 T05A10.3 P W All gene names: T05A10.3; CE03635; WBGene00011460; WP:CE03635; XL407 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ReichertK et al 2005  T3 xenobiotic                                   
                                              downregulated, Reinke et al 2004, list of genes in                                 
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, herm soma enriched genes,                            
                                              Reinke et al 2004, GO categories, ViswanathanM et al                               
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

T05B4.3 T05B4.3 P W All gene names: phat-4; T05B4.3; 5E609; CE13197; WBGene00020237; WP:CE13197
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jones et al 2001  Non dauer genes P<0.05,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T06E4.8 T06E4.8 P W All gene names: T06E4.8; 5K102; CE23951; WBGene00011535; WP:CE23951
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, ViswanathanM et al 2005  Fig6A Resveratrol,                             
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0, Wang et al 2003                            
                                               S4 LateList                                                                       

T06E4.9 T06E4.9 P W All gene names: T06E4.9; 5K101; CE23952; WBGene00011536; WP:CE23952
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T11F9.6 T11F9.6 P W All gene names: nas-22; T11F9.6; 5L951; CE06418; NM_073507; WBGene00003541; WP:CE06418 WormBase description: zinc metalloprotease
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ReichertK et al 2005  T3 xenobiotic                                   
                                              downregulated, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

T19A6.3 T19A6.3 P W All gene names: T19A6.3; 1I977; CE28962; WBGene00011828; WP:CE28962
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, McCarroll et al 2004  SFig1-4 conserved w/                            
                                              Drosoph                                                                            

W02A2.3 W02A2.3 P W All gene names: pqn-74; W02A2.3; W02A2.C; 4O94; CE21233; NM_070161; WBGene00004156; WP:CE21233 WormBase description: The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, intrinsic, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              list of genes in cluster C, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, ViswanathanM et al 2005  T1 pqn genes,                                  
                                              ViswanathanM et al 2005  Fig6A Resveratrol                                         

Y11D7A.11 Y11D7A.11 P W All gene names: col-120; Y11D7A.11; 4K26; CE20194; NM_069216; WBGene00000694; WP:CE20194
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jones et al 2001  Non dauer genes P<0.05,                             
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, list of genes in cluster C,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y19D10A.12 Y19D10A.12 P W All gene names: Y19D10A.12; 5C850; CE32237; WBGene00021227; WP:CE32237
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, McCarroll et al 2004  SFig5 conserved w/                              
                                              yeast, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y19D10A.4 Y19D10A.4 P W All gene names: Y19D10A.4; 5C871; WBGene00021219
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, McCarroll et al 2004  SFig1-4 conserved w/                            
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y2H9A.4 Y2H9A.4 P W All gene names: F25H9.8; Y2H9A.4; 5N927; CE21292; WBGene00012381; WP:CE21292
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, herm soma enriched                                 
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT                                 

Y37E11AR.6 Y37E11AR.6 P W All gene names: efn-1; vab-2; Y37E11AR.6; 4E526; CE27606; NM_068011; WBGene00006869; WP:CE27606 WormBase description: The vab-2 gene encodes an ephrin molecule related to human ephrin B2 (OMIM:600527); VAB-2, expressed primarily in neuronal cells, is a ligand for the VAB-1 ephrin receptor and plays a role in embryonic cell movements, epidermal morphogenesis during later embryogenesis, and oocyte maturation; VAB-2 synergizes with PTP-3, a LAR-like receptor tyrosine phosphatase, to regulate morphogenesis.
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, fem1 enriched genes,                               
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, mixed oogenesis soma, Reinke et al                              
                                              2004, list of genes in cluster B                                                   

Y37E11C.1 Y37E11C.1 P W All gene names: unc-33; Y37E11C.1; Y37E11C.C; 4E289; CE21557; NM_171303; WBGene00006769; WP:CE21557 WormBase description: unc-33 encodes a conserved member of the CRMP/TOAD/Ulip/DRP family of proteins that includes mammalian CRMP-2 (Collapsin response mediator protein-2), which is essential for axon guidance and axonogenesis; in C. elegans, unc-33 activity is required for several biological processes including outgrowth and guidance of sensory, motor, and interneurons, sex myoblast migration, normal body movement and morphology, egg laying, and defecation; by homology to CRMP-2, UNC-33 is predicted to bind tubulin heterodimers and promote microtubule assembly, thereby regulating the extension and branching of cellular projections during neuronal polarization; UNC-33 is reportedly expressed exclusively in axonal processes from after early embryogenesis through larval and adult stages.
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep                                                                        

Y38C1BA.3 Y38C1BA.3 P W All gene names: col-109; Y38C1BA.3; Y38C1BA.A; 4C582; CE21569; NM_067737; WBGene00000683; WP:CE21569 WormBase description: collagen
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, ViswanathanM et al 2005  Fig6A Resveratrol,                             
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT,                                
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 genes pass two-wayANOVA P0, Wang et al 2003                            
                                               S4 LateList                                                                       

Y39C12A.4 Y39C12A.4 P W All gene names: sre-17; Y39C12A.4; Y39C12A.D; 4M996; NM_069921; WBGene00012706
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep                                                                        

Y39C12A.5 Y39C12A.5 P W All gene names: sre-16; Y39C12.E; Y39C12A.5; Y39C12A.E; 4M998; CE38118; NM_069922; WBGene00012707; WP:CE38118 WormBase description: 7TM receptor, sre family
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, herm soma enriched                                 
                                              genes                                                                              

Y39G8B.8 Y39G8B.8 P W All gene names: Y39G8B.8; 2O280; WBGene00014885
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

Y40C7B.3 Y40C7B.3 P W All gene names: Y40C7B.3; CE24262; WBGene00021499; WP:CE24262; XR870
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep                                                                        

Y43F4A.1 Y43F4A.1 P W All gene names: Y43F4A.1; 3O317; CE16622; CE34227; WBGene00012796; WP:CE16622; WP:CE34227 WormBase description: zinc metallopeptidase (M8 family)
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, McCarroll et al 2004  SFig1-4 conserved w/                            
                                              Drosoph, Reinke et al 2004, list of genes in cluster                               
                                              order, Reinke et al 2004, list of genes in cluster B,                              
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 LateList, Wang et al 2003  S4 genes pass                               
                                              two-wayANOVA P0                                                                    

Y43F8B.14 Y43F8B.14 P W All gene names: Y43F8B.14; Y43F8B.A; 5T926; CE21898; WBGene00012824; WP:CE21898
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y43F8C.1 Y43F8C.1 P W All gene names: nlp-25; Y43F8C.1; 5U81; CE21899; NM_075400; WBGene00003763; WP:CE21899
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ReichertK et al 2005  T3 xenobiotic                                   
                                              downregulated, Reinke et al 2004, list of genes in                                 
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, IVb male soma enriched                            
                                              genes, Reinke et al 2004, list of genes in cluster B,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Early genes, Wang et al 2003  S4 genes pass                                     
                                              two-wayANOVA P0                                                                    

Y45G12C.9 Y45G12C.9 P W All gene names: srd-72; Y45G12C.9; Y45G12C.H; 5D10; NM_071291; WBGene00021572 WormBase description: 7TM chemoreceptor, srd family
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated                                                                          

Y46G5A.26 Y46G5A.26 P W All gene names: Y46G5A.26; 2N128; CE31117; CE36673; WBGene00012915; WP:CE31117; WP:CE36673
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep                                                                        

Y53F4B.2 Y53F4B.2 P W All gene names: elo-9; Y53F4B.2; Y53F4B.C; 2P242; CE22388; NM_064685; WBGene00001247; WP:CE22388 WormBase description: The elo-9 gene encodes a paralog of elo-1 and elo-2, each of which encodes a polyunsaturated fatty acid (PUFA) elongase; elo-9 has no known function in vivo.
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Wang et al 2003  S4 TransientList, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

ZC196.4 ZC196.4 P W All gene names: ZC196.4; 5J211; CE36348; WBGene00022548; WP:CE36348
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Jones et al 2001  Dauer specific genes                                
                                              P<0.05, Reinke et al 2004, herm soma enriched genes,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

ZC196.5 ZC196.5 P W All gene names: ZC196.5; 5J209; CE15074; WBGene00022549; WP:CE15074
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, herm soma enriched genes                                 

ZK1307.2 ZK1307.2 P W All gene names: ZK1307.2; 2J944; CE01691; WBGene00014245; WP:CE01691
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

ZK180.5 ZK180.5 P W All gene names: ZK180.5; ZK180.5b.1; ZK180.5b.2; 4F280; CE07623; CE28179; CE31746; WBGene00022679; WP:CE07623; WP:CE28179; WP:CE31746
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T4 57 vhl-1 depend                             
                                              hif-1 indep, Reinke et al 2004, list of genes in                                   
                                              cluster order, Reinke et al 2004, wt herm vs wt herm                               
                                              enriched gen, Reinke et al 2004, list of genes in                                  
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol