Wang et al 2003 S6 removed genes of contamination, 210 genes

Gene list file name:Wang2003.S6_220genes_removed_bc_of_contamination.t
Type of gene identifier:MA primer pair (sjj)
Description:Wang et al 2003 Supplement6: 220 genes removed because of contamination  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

AC3.5 AC3.5 P W All gene names: AC3.5; 5K873; CE36372; WBGene00007071; WP:CE36372 WormBase description: glutamyl aminopeptidase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

B0213.11 B0213.11 P W All gene names: cyp-34A6; B0213.11; 5E432; CE35205; NM_071699; WBGene00015041; WP:CE35205 WormBase description: cytochrome P-450
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

B0213.3 B0213.3 P W All gene names: nlp-28; B0213.3; 5E463; CE16774; NM_071709; WBGene00003766; WP:CE16774
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

B0244.8 B0244.8 P W All gene names: egg-1; B0244.8; 3G819; CE32094; WBGene00015083; WP:CE32094 WormBase description: LDL receptor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, IVb male soma enriched genes, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S6                                 
                                              removed genes of contamination                                                     

B0280.5 B0280.5 P W All gene names: B0280.5; 3I192; CE31868; WBGene00015102; WP:CE31868 WormBase description: B0280.5 encodes a protein with a chitin binding peritrophin-A domain that is required, in conjunction with CEJ-1, for early embryonic development; B0280.5 mRNA is expressed specifically in the adult hermaphrodite germ line, is a direct target of GLD-1, and has an RNAi phenotype consistent with the hypothesis that B0280.5 is an effector of GLD-1 in the germline.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, IVb male                                
                                              soma enriched genes, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

B0286.3 B0286.3#2 P W All gene names: B0286.3; 2E660; CE03863; WBGene00015116; WP:CE03863 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: saicar synthetase/air carboxlyase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Murphy et al 2003  Fig2 Class1                               
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

B0303.5 B0303.5 P W All gene names: B0303.5; WBGene00015127
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig2D Tc3 genes,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

B0304.6 B0304.6 P W All gene names: sra-33; B0304.6; 2E824; CE34634; NM_062401; WBGene00005059; WP:CE34634 WormBase description: 7TM chemoreceptor, sra family
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

B0403.2 B0403.2 P W All gene names: ubc-17; B0403.2; CE37602; NM_076787; WBGene00006712; WP:CE37602; XH675 WormBase description: ubiquitin-conjugating enzyme
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated, Wang et al 2003  S6 removed genes of                            
                                              contamination                                                                      

B0416.7 B0416.7 P W All gene names: B0416.7; CE02437; CE39552; WBGene00015182; WP:CE02437; WP:CE39552; XJ914
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, list of genes in cluster C, ViswanathanM et al                            
                                              2005  S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                            
                                              daf-16 Resveratrol, Wang et al 2003  S6 removed genes                              
                                              of contamination                                                                   

B0454.5 B0454.5 P W All gene names: B0454.5; 2D329; CE37697; WBGene00015196; WP:CE37697
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

B0513.4 B0513.4 P W All gene names: B0513.4; 4O645; CE15560; WBGene00007196; WP:CE15560
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S6 removed genes of contamination                                 

C03G6.15 C03G6.15 P W All gene names: cyp-35A2; C03G6.15; 5H840; CE35217; NM_072479; WBGene00015400; WP:CE35217 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, ReichertK et al 2005 T1 xenobiotic induced                               
                                              P450, Reinke et al 2004, herm soma enriched genes, Wang                            
                                              et al 2003  S6 removed genes of contamination                                      

C03G6.2 C03G6.2 P W All gene names: srx-56; C03G6.2; 5H853; CE38030; NM_072484; WBGene00005947; WP:CE38030 WormBase description: 7TM chemoreceptor, srx family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C04E12.6 C04E12.6#2 P W All gene names: C04E12.6; 5D834; CE16819; WBGene00015436; WP:CE16819
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

C05E4.1 C05E4.1 P W All gene names: pes-21; C05E4.1; 5B243; CE07935; NM_070917; WBGene00005643; WP:CE07935 WormBase description: srp-2 encodes an ovalbumin-like serpin (ov-serpin) member of the serine protease inhibitor superfamily that is orthologous to human NEUROSERPIN (OMIM:602445, mutated in familial encephalopathy with neuroserpin inclusion bodies); SRP-2 is predicted to function as a suicide substrate that inhibits the proteolytic activity of serine proteases, and in vitro, recombinant SRP-2 is able to inhibit granzyme B activity; however, as loss of srp-2 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of SRP-2 in C. elegans development and/or behavior is not yet known; srp-2 expression is detected in hypodermal cells, particularly in the lateral seam cells. WormBase CDS description: serine protease inhibitor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Wang et al 2003  S6 removed genes of                             
                                              contamination                                                                      

C06A5.9 C06A5.9 P W All gene names: rnf-1; tag-54; C06A5.9; 1G586; CE34249; NM_059337; WBGene00004380; WP:CE34249
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, wt herm vs wt male enriched gen, Reinke et al                                
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S6 removed                            
                                              genes of contamination                                                             

C07A9.9 C07A9.9 P W All gene names: C07A9.9; 3K750; CE00493; WBGene00007405; WP:CE00493
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C07G2.1 C07G2.1 P W All gene names: cej-1; C07G2.1; C07G2.1a.1; C07G2.1a.2; 3F579; CE00665; CE33971; WBGene00000465; WP:CE00665; WP:CE33971 WormBase description: cej-1 encodes a protein with a chitin binding peritrophin-A domain that is required, in conjunction with B0280.5, for early embryonic development; cej-1 mRNA is expressed specifically in the adult hermaphrodite germ line, is a direct target of GLD-1, and has an RNAi phenotype consistent with the hypothesis that CEJ-1 is an effector of GLD-1 in the germline.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C08A9.1 C08A9.1, C08A9.1#2 P W All gene names: sod-3; C08A9.1; CE08002; MnSOD; NM_078363; WBGene00004932; WP:CE08002; XR707 WormBase description: sod-3 encodes a iron/manganese superoxide dismutase, predicted to be mitochondrial, that might defend against oxidative stress and promote normal lifespan; sod-3 mRNA levels are diminished by mutation of daf-16, and heterologously expressed SOD-3 in E. coli protects against methyl viologen-induced oxidative stress. WormBase CDS description: superoxide dismutase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T2 lifespan and                                 
                                              Dauer, Lund et al 2002  Fig4 Mount 15, McElwee et al                               
                                              2003  T1 targets of daf-16, McElwee et al 2003  Fig4                               
                                              daf-16 target lifspan, Murphy et al 2003  Fig2 Class1                              
                                              elongate lifespan, Reinke et al 2004, fem1 enriched                                
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

C08A9.5 C08A9.5 P W All gene names: C08A9.5; CE06787; WBGene00015585; WP:CE06787; XR702
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

C08B11.1 C08B11.1 P W All gene names: zyg-11; C08B11.1; 2I309; CE01471; NM_063276; WBGene00006996; WP:CE01471 WormBase description: Leucine Rich Repeat (2 copies)
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3D Oocyte-en,                                 
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, mixed oogenesis soma, Reinke et al 2004, wt herm                             
                                              vs wt male enriched gen, Reinke et al 2004, list of                                
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C08E3.4 C08E3.4 P W All gene names: C08E3.4; 2B898; CE32119; WBGene00015596; WP:CE32119
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Murphy                            
                                              et al 2003  Fig2 Class1 elongate lifespan, ViswanathanM                            
                                              et al 2005  S2 sir-2.1 regulated, Wang et al 2003  S6                              
                                              removed genes of contamination                                                     

C08E3.5 C08E3.5#2 P W All gene names: C08E3.5; 2B900; CE34667; WBGene00015597; WP:CE34667 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; this gene's encoded protein also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction.
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

C08H9.14 C08H9.14#2 P W All gene names: C08H9.14; 2K162; CE02999; WBGene00007473; WP:CE02999 WormBase description: chitinase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

C09G9.6 C09G9.6 P W All gene names: moe-1; oma-1; C09G9.6; C09G9.6.1; C09G9.6.2; 4J655; CE03005; NM_069141; WBGene00003864; WP:CE03005 WormBase description: The oma-1 gene encodes a zinc finger protein of the TIS11 finger type that is paralogous to OMA-2; while either oma-1 or oma-2 individually have no obvious mutant phenotype, a normal copy of at least one of these genes is required for oocyte maturation. WormBase CDS description: Zinc finger protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, GO categories,                            
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

C10G8.4 C10G8.4 P W All gene names: C10G8.4; 5F789; CE08075; WBGene00015683; WP:CE08075
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S6 removed genes of contamination                                 

C16D6.2 C16D6.2 P W All gene names: C16D6.2; CE37317; WBGene00007635; WP:CE37317; XN154 WormBase description: 7 transmembrane receptor (rhodopsin family)
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

C18H7.1 C18H7.1 P W All gene names: C18H7.1; C18H7.1.1; C18H7.1.2; 4B373; CE27718; WBGene00015993; WP:CE27718
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

C25A1.8 C25A1.8 P W All gene names: C25A1.8; 1K760; CE08374; WBGene00007709; WP:CE08374 WormBase description: lectin
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C25H3.1 C25H3.1 P W All gene names: C25H3.1; 2F991; CE37321; WBGene00016111; WP:CE37321
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              fem3 enriched genes, Wang et al 2003  S6 removed genes                             
                                              of contamination                                                                   

C28C12.2 C28C12.2 P W All gene names: C28C12.2; 4J265; CE04109; WBGene00016178; WP:CE04109
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C28D4.3 C28D4.3 P W All gene names: gln-6; C28D4.3; C28D4.3.1; C28D4.3.2; 4K504; CE08432; NM_069332; WBGene00001607; WP:CE08432 WormBase description: glutamine synthase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, Fig2b shared gemlines, Reinke                            
                                              et al 2004, list of genes in cluster order, Reinke et                              
                                              al 2004, oogenesis enriched genes, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, GO categories,                            
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

C29F5.3 C29F5.3 P W All gene names: C29F5.3; 2G580; CE02510; WBGene00016212; WP:CE02510
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, spermatogenesis                                  
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt males vs glp4 male enriched , Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, list of                                 
                                              genes in cluster D, Reinke et al 2004, shared sperm,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

C31B8.2 C31B8.2 P W All gene names: C31B8.2; 5D395; CE35252; WBGene00016280; WP:CE35252
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

C31B8.3 C31B8.3 P W All gene names: srh-146; C31B8.3; 5D393; NR_000490; WBGene00005362
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

C39E9.2 C39E9.2 P W All gene names: C39E9.2; 4N829; CE05385; WBGene00008027; WP:CE05385 WormBase description: testis-specific protein TPX-1 like
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T3 xenobiotic                               
                                              downregulated, Reinke et al 2004, IVb male soma                                    
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C40H1.5 C40H1.5 P W All gene names: C40H1.5; 3K419; CE00113; WBGene00008040; WP:CE00113 WormBase description: Transthyretin-like family
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C41C4.7 C41C4.7 P W All gene names: C41C4.7; C41C4.7b.1; C41C4.7b.2; 2I426; CE28541; CE32325; WBGene00008052; WP:CE28541; WP:CE32325 WormBase description: C41C4.7 encodes an ortholog of the human cystinosin gene (CTNS; OMIM:606272, which when mutated leads to nephropathic cystinosis (OMIM:219800); sequence analysis suggests that cystinosin is an integral lysosomal membrane protein.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C42D8.2 C42D8.2 P W All gene names: vit-2; C42D8.2; CE06950; NM_076467; WBGene00006926; WP:CE06950; XF725 WormBase description: The vit-2 gene encodes the vitellogenin homolog YP170. WormBase CDS description: vitellogenin
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              Wang et al 2003  S6 removed genes of contamination                                 

C44B12.1 C44B12.1 P W All gene names: C44B12.1; 4B881; CE27850; WBGene00016636; WP:CE27850
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, herm soma enriched genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

C49A1.10 C49A1.10 P W All gene names: C49A1.10; 1O834; CE39236; WBGene00008191; WP:CE39236
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C49G7.11 C49G7.11 P W All gene names: C49G7.11; 5E530; CE08869; WBGene00016789; WP:CE08869
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

C50H11.1 C50H11.1, C50H11.1#2 P W All gene names: C50H11.1; 5D567; CE08917; WBGene00016849; WP:CE08917 WormBase description: ATP-dependent AMP-binding protein
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15,                                   
                                              McCarroll et al 2004  SFig5 conserved w/ yeast,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

C52E2.4 C52E2.F P W All gene names: C52E2.4; C52E2.E; C52E2.F; 2C121; CE25828; WBGene00016883; WP:CE25828
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

C53A5.4 C53A5.4 P W All gene names: tag-191; C53A5.4; 5P16; CE08953; WBGene00007049; WBGene00008264; WP:CE08953 WormBase description: serine/threonine kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, spermatogenesis enriched                                 
                                              genes, Reinke et al 2004, wt herm vs wt herm enriched                              
                                              gen, Reinke et al 2004, fem3 enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt males vs glp4 male enriched , Reinke et al 2004, GO                             
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              D, Reinke et al 2004, shared sperm, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit, Wang et al 2003  S6                                  
                                              removed genes of contamination, Wang et al 2003  S7                                
                                              SAGE genes in the dataset                                                          

C55A6.3 C55A6.3 P W All gene names: C55A6.3; 5L992; CE39483; WBGene00008332; WP:CE39483 WormBase description: dehydrogenase
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

D1054.10 D1054.10 P W All gene names: D1054.10; 5L272; CE05528; WBGene00008377; WP:CE05528
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, herm soma enriched genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

D1054.11 D1054.11 P W All gene names: D1054.11; 5L275; CE05529; WBGene00008378; WP:CE05529
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, herm soma enriched genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT,                                
                                              Wang et al 2003  S6 removed genes of contamination                                 

D2030.7 D2030.7 P W All gene names: D2030.7; D2030.7.1; D2030.7.2; 1I165; CE30270; WBGene00008417; WP:CE30270 WormBase description: Zinc finger, C3HC4 type (RING finger)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

E01A2.8 E01A2.B P W All gene names: E01A2.8; 1E714; CE24875; WBGene00017090; WP:CE24875 WormBase description: The E01A2.8 gene encodes one of five paraoxonase-like proteins; it is homologous to the human PARAOXONASE 1 gene (PON1, OMIM:168820), which in some allelic forms is associated with susceptibility to coronary artery disease.
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, list of genes in                             
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

E04D5.4 E04D5.4 P W All gene names: E04D5.4; 2K731; CE37893; WBGene00008483; WP:CE37893
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

E04F6.3 E04F6.3 P W All gene names: maoc-1; E04F6.3; 2H487; CE01215; WBGene00017123; WP:CE01215 WormBase description: E04F6.3 encodes a protein that is orthologous (with 52% identity over 93% of its length) to residues 334-609 of human 17-BETA-HYDROXYSTEROID DEHYDROGENASE IV (HSD17B4; OMIM:601860, mutated in D-bifunctional protein deficiency), a protein of 736 residues whose N- and C-terminal domains are orthologous to DHS-28; E04F6.3 contains a MaoC-like domain, found in diverse enzymes (HSD17B4, peroxisomal hydratase-dehydrogenase-epimerase, and the fatty acid synthase beta subunit); E04F6.3 has no obvious function in mass RNAi assays. WormBase CDS description: Hydratase-dehydrogenase-epimerase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

F01D4.8 F01D4.8 P W All gene names: F01D4.8; 4L216; CE09160; WBGene00008490; WP:CE09160 WormBase description: cysteine synthase like
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F08B12.4 F08B12.4 P W All gene names: F08B12.4; F08B12.4.1; F08B12.4.2; CE26708; WBGene00008572; WP:CE26708; XM26
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, Reinke et al 2004, mixed sperm soma,                            
                                              Reinke et al 2004, fem3 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S6                                 
                                              removed genes of contamination                                                     

F08H9.4 F08H9.4 P W All gene names: F08H9.4; 5O946; CE09268; WBGene00008592; WP:CE09268 WormBase description: F08H9.4 encodes a heat shock protein (HSP) of the HSP16 class; unlike most HSP16s in C. elegans, it is specifically expressed in a particular tissue (the excretory canal and ventral nerve-cord neurons), and its expression is only mildly induced by heat shock; however, F08H9.4 expression is increased by heat shock, is induced in a new tissue type (intestine) by heat shock, and probably aids heat shock resistance, since F08H9.4(RNAi) animals die as embryos in heat shock at a higher rate than normal; in general, HSP16 proteins are thought to act as passive ligands for unfolded proteins that keep them safe from aggregation until the proteins can be refolded by a large (ATP-consuming) HSP. WormBase CDS description: heat shock protein
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Kwon et al 2004  T1 Class1 rapid-induction                                 
                                              Ethanol, Lund et al 2002 Aging time course Fig2C                                   
                                              heatshock, Romagnolo et al 2002  Fig2a heat shock, Shen                            
                                              et al 2005  T1 hif-1indepen hypoxia, Wang et al 2003                               
                                              S8 SAGE genes in the dauer exit, Wang et al 2003  S6                               
                                              removed genes of contamination, Wang et al 2003  S7                                
                                              SAGE genes in the dataset                                                          

F09D12.1 F09D12.1 P W All gene names: grd-10; F09D12.1; 4E207; CE16971; NM_067946; WBGene00001699; WP:CE16971 WormBase description: grd-10 encodes a protein that contains a novel Ground domain that is closely related to GRD-5.
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F10B5.3 F10B5.3 P W All gene names: F10B5.3; F10B5.3.1; F10B5.3.2; 2I438; CE01545; WBGene00008640; WP:CE01545 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

F11C1.1 F11C1.1 P W All gene names: F11C1.1; CE03186; WBGene00008690; WP:CE03186; XN606
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Romagnolo et al 2002  Fig3b Unkown,                                        
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination, Wang et al                             
                                              2003  S7 SAGE genes in the dataset, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit                                                       

F12F3.1 F12F3.1 P W All gene names: exp-2; F12F3.1; F12F3.1a.1; F12F3.1a.2; 5G623; CE09359; CE37629; CE37630; CE37631; WBGene00001374; WP:CE09359; WP:CE37629; WP:CE37630; WP:CE37631 WormBase description: exp-2 encodes a member of the six-transmembrane voltage-activated (Kv-type) family of potassium channels; exp-2 is required for normal pharyngeal muscle action potentials and hence, for normal feeding behavior; in addition, exp-2 is required for chemotaxis; when expressed in Xenopus oocytes, EXP-2 displays inward rectifying currents, however when assessed in endogenous pharyngeal tissue, EXP-2 displays hyperpolarization-activated outward currents; an EXP-2 translational reporter fusion is expressed strongly in pharyngeal muscles, amphid, phasmid, and head neurons, posterior enteric muscles, and occasionally faintly in the egg-laying muscles.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S6 removed genes of contamination                                 

F15D4.2 F15D4.2 P W All gene names: F15D4.2; F15D4.2.1; F15D4.2.2; 2N507; CE09415; WBGene00008859; WP:CE09415
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F16H6.5 F16H6.5 P W All gene names: F16H6.5; 5S679; CE18601; WBGene00008895; WP:CE18601
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                             
                                              Wang et al 2003  S6 removed genes of contamination                                 

F17A9.5 F17A9.5 P W All gene names: F17A9.5; 5G592; CE09449; WBGene00017537; WP:CE09449
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F17E9.4 F17E9.4 P W All gene names: F17E9.4; 4J113; CE27971; WBGene00017541; WP:CE27971
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

F18A1.7 F18A1.7 P W All gene names: F18A1.7; F18A1.7.1; F18A1.7.2; 2H952; CE32628; WBGene00017548; WP:CE32628
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004,                                
                                              list of genes in cluster E, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated, Wang et al 2003  S6 removed genes of                            
                                              contamination                                                                      

F19F10.3 F19F10.3 P W All gene names: F19F10.3; 5I31; CE09483; WBGene00017599; WP:CE09483
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, Wang et al 2003  S6 removed genes of                                 
                                              contamination                                                                      

F20D6.5 F20D6.5 P W All gene names: F20D6.5; 5I645; CE30757; WBGene00017635; WP:CE30757
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Lund et al 2002  Fig4 Mount 15, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S6                                 
                                              removed genes of contamination, Zhang et al 2002, T1                               
                                              mec-3 dependent genes                                                              

F21C3.2 F21C3.2#2 P W All gene names: tyr-3; F21C3.2; 1H852; CE17689; NM_059654; WBGene00009001; WP:CE17689 WormBase description: tyrosinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S6 removed genes of contamination,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

F22E5.13 F22E5.13 P W All gene names: F22E5.13; 2C938; CE31794; WBGene00017711; WP:CE31794
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F25E2.2 F25E2.2 P W All gene names: F25E2.2; CE37106; WBGene00017780; WP:CE37106; XB426
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F27C8.6 F27C8.6 P W All gene names: F27C8.6; F27C8.6.1; F27C8.6.2; 4K352; CE03271; WBGene00009186; WP:CE03271 WormBase description: esterase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, GO categories, Reinke et al 2004, list of genes                              
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F28G4.1 F28G4.1 P W All gene names: cyp-37B1; F28G4.1; 5Q759; CE15919; NM_074708; WBGene00009226; WP:CE15919 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, ReichertK et al 2005 T1 xenobiotic induced P450,                             
                                              Reinke et al 2004, list of genes in cluster A, Reinke                              
                                              et al 2004, list of genes in cluster order,                                        
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

F28H1.2 F28H1.2 P W All gene names: cpn-3; F28H1.2; 1E557; CE09767; NM_058881; WBGene00000779; WP:CE09767 WormBase description: cpn-3 encodes a calponin homolog, most closely related to its paralog CPN-4 in C. elegans; CPN-3 is more similar to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25 than to calponin per se. WormBase CDS description: calponin
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F29G9.6 F29G9.6 P W All gene names: dhs-17; F29G9.6; 5G508; CE27376; NM_072160; WBGene00000980; WP:CE27376 WormBase description: dhs-17 encodes a member of the short-chain dehydrogenases/reductases family (SDR).
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F32G8.3 F32G8.3 P W All gene names: F32G8.3; 5L34; CE05792; WBGene00009339; WP:CE05792
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F35F10.6 F35F10.6 P W All gene names: F35F10.6; 5D762; CE09931; WBGene00018056; WP:CE09931
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

F36H1.6 F36H1.6 P W All gene names: alh-3; F36H1.6; 4L789; CE05817; NM_069653; WBGene00000109; WP:CE05817 WormBase description: alh-3 encodes an aldehyde dehydrogenase predicted to be mitochondrial. WormBase CDS description: formyltetrahydrofolate dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster A, Reinke et al 2004, list of genes in                                  
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F37B1.4 F37B1.4 P W All gene names: gst-15; F37B1.4; 2N902; CE09991; NM_064459; WBGene00001763; WP:CE09991 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2                                           
                                              Glut-S-transferase, Jones et al 2001  Dauer specific                               
                                              genes P<0.05, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination, Wang et al 2003  S7 SAGE genes in the                               
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

F37B1.5 F37B1.5 P W All gene names: gst-16; F37B1.5; 2N914; CE09992; NM_064462; WBGene00001764; WP:CE09992 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Oxidation,                            
                                              Wang et al 2003  S6 removed genes of contamination                                 

F37B1.8 F37B1.8 P W All gene names: gst-19; F37B1.8; 2N916; CE09995; NM_064463; WBGene00001767; WP:CE09995 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Custodia et al 2001  T2                                               
                                              Glut-S-transferase, Wang et al 2003  S6 removed genes                              
                                              of contamination                                                                   

F38E11.6 F38E11.6 P W All gene names: F38E11.6; 4K228; CE33780; CE33781; WBGene00009543; WP:CE33780; WP:CE33781
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F40E10.5 F40E10.5 P W All gene names: F40E10.5; CE05840; NM_078040; WBGene00009573; WP:CE05840; XP321
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

F40G12.4 F40G12.4 P W All gene names: F40G12.4; 5O748; CE30075; WBGene00009599; WP:CE30075
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

F41B4.1 F41B4.1 P W All gene names: F41B4.1; CE30980; WBGene00018257; WP:CE30980; XH444
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

F43G6.11 F43G6.4 P W All gene names: F43G6.11; 2M91; CE31698; CE31699; NM_171044; NM_171045; WBGene00009663; WP:CE31698; WP:CE31699
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F44E7.5 F44E7.5 P W All gene names: F44E7.5; 5G260; CE33093; CE33094; WBGene00018427; WP:CE33093; WP:CE33094
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, oogenesis enriched genes,                                       
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

F46H6.1 F46H6.1 P W All gene names: rhi-1; F46H6.1; F46H6.1.1; F46H6.1.2; CE04595; NM_076373; WBGene00004356; WP:CE04595; XF129 WormBase description: rho GDP dissociation inhibitor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Wang et al 2003  S6 removed genes of                                      
                                              contamination                                                                      

F47B7.1 F47B7.1 P W All gene names: F47B7.1; F47B7.1.1; F47B7.1.2; CE02743; WBGene00018532; WP:CE02743; XE407
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

F47B8.1 F47B8.1 P W All gene names: F47B8.1; 5O794; CE10632; WBGene00009802; WP:CE10632
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

F48E3.4 F48E3.4 P W All gene names: F48E3.4; CE35547; WBGene00018605; WP:CE35547; XI112
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, herm soma enriched genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

F49C5.3 F49C5.3 P W All gene names: F49C5.3; 2M825; CE37917; WBGene00009866; WP:CE37917
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F49E12.10 F49E12.10 P W All gene names: F49E12.10; 2I681; CE03386; WBGene00009903; WP:CE03386 WormBase description: ERG-3 like protein
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F52B5.5 F52B5.5 P W All gene names: F52B5.5; F52B5.5a.1; F52B5.5a.2; F52B5.5b.1; F52B5.5b.2; 1I901; CE29805; CE38369; NM_059861; WBGene00000467; WP:CE29805; WP:CE38369 WormBase description: cep-1 encodes an ortholog of the human tumor suppressor p53 (OMIM:191170, mutated in Li-Fraumeni syndrome) that promotes DNA damage-induced apoptosis and is required for normal meiotic segregation in the germ line, and affects sensitivity to hypoxia-induced lethality and longevity in response to starvation; CEP-1 is expressed ubiquitously in embryos and in the nucleoli of a subset of pharyngeal cells.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, Fig2b shared gemlines, Reinke et al 2004,                              
                                              wt vs glp-4 enriched genes, Reinke et al 2004, list of                             
                                              genes in cluster order, Reinke et al 2004, wt males vs                             
                                              glp4 male enriched , Reinke et al 2004, list of genes                              
                                              in cluster E, Wang et al 2003  S6 removed genes of                                 
                                              contamination                                                                      

F52D2.4 F52D2.4 P W All gene names: gei-12; F52D2.4; CE23757; NM_075966; WBGene00001569; WP:CE23757; XC606 WormBase description: gei-12 encodes a novel protein that affects embryonic viability and development of the hypodermis; interacts with GEX-3 in yeast two-hybrid assays, and is expressed in all somatic cells. WormBase CDS description: M. musculus T-cell activation protein TCA3
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S6 removed                            
                                              genes of contamination                                                             

F52E1.1 F52E1.1, F52E1.1#2 P W All gene names: pos-1; F52E1.1; 5I895; CE04629; NM_072771; WBGene00004078; WP:CE04629 WormBase description: pos-1 encodes a CCCH-type zinc-finger protein; during embryogenesis, maternally provided POS-1 is essential for proper fate specification of germ cells, intestine, pharynx, and hypodermis; POS-1's role in cell fate specification is likely as a translational regulator, as POS-1 is required, in posterior blastomeres, for positive regulation of apx-1 mRNA translation and negative regulation of glp-1 mRNA translation via direct binding to the spatial control region (SCR) in the glp-1 mRNA 3' UTR; in regulating mRNA translation, POS-1 interacts with SPN-4, an RNP-type RNA binding protein, that may function to negatively regulate POS-1 activity; pos-1 mRNA is first detected in the gonads of L4 and adult animals, and is present uniformly in oocytes and newly fertilized embryos; during early embryonic divisions, pos-1 mRNA is present at higher levels in germline blastomeres until it disappears following the division of P4; POS-1 protein is first apparent at low levels in 1-cell embryos, with subsequent expression mirroring that of pos-1 mRNA: high levels in germline blastomeres until its disappearance after the P4 division; in the germline blastomeres P1, P2, P3, and P4, POS-1 colocalizes with cytoplasmic and perinuclear P granules. WormBase CDS description: zinc-finger protein
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004,                                
                                              list of genes in cluster E, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated, Wang et al 2003  S6 removed genes of                            
                                              contamination                                                                      

F53B2.3 F53B2.3, F53B2.3#2 P W All gene names: F53B2.3; 4N284; CE05917; WBGene00009955; WP:CE05917
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F54C1.7 F54C1.7 P W All gene names: pat-10; tnc-1; F54C1.7; F54C1.7.1; F54C1.7.2; F54C1.7.3; 1F588; CE11052; NM_059100; WBGene00003934; WP:CE11052 WormBase description: pat-10 encodes body wall muscle troponin C, the calcium-binding component of the troponin complex of actin thin filaments; PAT-10 is essential for muscle contraction and thus for completion of embryonic morphogenesis and elongation; by homology, PAT-10 likely functions to regulate body wall muscle contraction in response to changes in intracellular calcium; PAT-10 is expressed in body wall muscle but is also detected in vulval and anal muscles; expression in body wall muscle begins during early embryonic morphogenesis, concurrent with expression of other body wall muscle structural components. WormBase CDS description: calcium binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Reinke et al 2004, wt herm vs wt herm                                   
                                              enriched gen, Roy et al 2002  S2 positivecontrol L1                                
                                              muscle, Wang et al 2003  S6 removed genes of                                       
                                              contamination                                                                      

F54C9.3 F54C9.3 P W All gene names: F54C9.3; 2I856; CE02253; WBGene00010041; WP:CE02253
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F54C9.8 F54C9.8 P W All gene names: puf-5; F54C9.8; 2I867; CE02258; NM_063413; WBGene00004241; WP:CE02258 WormBase description: Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain) (6 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, Fig2b shared                                   
                                              gemlines, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F54F3.3 F54F3.3 P W All gene names: F54F3.3; 5N401; CE18732; WBGene00010062; WP:CE18732 WormBase description: lipase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, ViswanathanM et al 2005  S2 sir-2.1                                      
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F54F3.4 F54F3.4 P W All gene names: F54F3.4; 5N403; CE19894; WBGene00010063; WP:CE19894 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: dehydrogenase
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

F55B11.2 F55B11.2 P W All gene names: F55B11.2; 4P186; CE32898; WBGene00010084; WP:CE32898
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

F55G1.7 F55G1.7 P W All gene names: F55G1.7; 4I232; CE07284; WBGene00018903; WP:CE07284
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15, Reinke                            
                                              et al 2004, list of genes in cluster A, Reinke et al                               
                                              2004, fem1 enriched genes, Reinke et al 2004, list of                              
                                              genes in cluster order, Reinke et al 2004, oogenesis                               
                                              enriched genes, Reinke et al 2004, wt vs glp-4 enriched                            
                                              genes, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Wang et al 2003  S6 removed genes of contamination                            

F56B6.1 F56B6.1 P W All gene names: F56B6.1; WBGene00043369
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, Wang et al 2003  S6 removed genes of                                        
                                              contamination                                                                      

F57B10.9 F57B10.9 P W All gene names: F57B10.9; 1H128; CE30546; WBGene00019006; WP:CE30546 WormBase description: F57B10.9 is orthologous to the human gene SPARTIN (TAHCCP1; OMIM:607111), which when mutated leads to disease.
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

F57G9.1 F57G9.1 P W All gene names: sre-31; F57G9.1; 2M694; CE17917; NM_064232; WBGene00010217; WP:CE17917 WormBase description: 7TM receptor, sre family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

H12D21.7 H12D21.7 P W All gene names: H12D21.7; 5P379; CE36178; WBGene00010383; WP:CE36178
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

H14N18.2 H14N18.2 P W All gene names: H14N18.2; 5J413; CE17974; WBGene00019202; WP:CE17974
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S6                                 
                                              removed genes of contamination                                                     

H14N18.4 H14N18.4 P W All gene names: H14N18.4; 5J406; CE17976; CE30811; WBGene00019204; WP:CE17976; WP:CE30811 WormBase description: transpeptidase
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Reinke et al 2004, wt herm vs wt herm                                 
                                              enriched gen, Wang et al 2003  S6 removed genes of                                 
                                              contamination                                                                      

H19N07.3 H19N07.3 P W All gene names: H19N07.3; H19N07.3.1; H19N07.3.2; 5L598; CE16184; WBGene00010407; WP:CE16184
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

K01A2.10 K01A2.10 P W All gene names: K01A2.10; 2A612; CE19519; WBGene00019284; WP:CE19519
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

K02D7.2 K02D7.2 P W All gene names: K02D7.2; 4B64; CE30286; WBGene00019299; WP:CE30286 WormBase description: K02D7.2 encodes an ortholog of human SNAI2/SLUG (OMIM:602150, mutated in Waardenburg syndrome type IID) and Drosophila ESCARGOT; based on its orthology to SNAI2, K02D7.2 is predicted to be a transcriptional inhibitor. WormBase CDS description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

K02F3.9 K02F3.9 P W All gene names: K02F3.9; 3B458; CE01355; WBGene00019332; WP:CE01355
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

K04F1.15 K04F1.15, K04F1.15#2 P W All gene names: alh-2; K04F1.15; 5C125; CE23852; NM_071066; WBGene00000108; WP:CE23852 WormBase description: aldehyde dehydrogenase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

K04F1.9 K04F1.9 P W All gene names: K04F1.9; 5C139; CE19960; WBGene00019388; WP:CE19960
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

K07A1.6 K07A1.6 P W All gene names: K07A1.6; 1K168; CE18856; WBGene00010613; WP:CE18856
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S6 removed genes of contamination                                 

K07C6.4 K07C6.4 P W All gene names: ccp-35B1; cyp-35B1; dod-13; K07C6.4; 5E419; CE17175; NM_071692; WBGene00019472; WP:CE17175 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ReichertK et al 2005 T1 xenobiotic                              
                                              induced P450, Wang et al 2003  S6 removed genes of                                 
                                              contamination                                                                      

K07E3.3 K07E3.3 P W All gene names: dao-3; K07E3.3; CE25047; NM_076961; WBGene00000929; WP:CE25047; XI704 WormBase description: dao-3 encodes a protein containing a tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; expression is regulated by DAF-2. WormBase CDS description: methylenetetrahydrofolate dehydrogenase
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

K07H8.6 K07H8.6 P W All gene names: vit-6; K07H8.6; 4J31; CE18026; CE28594; CE34921; WBGene00006930; WP:CE18026; WP:CE28594; WP:CE34921 WormBase description: vitellogenin
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T3 xenobiotic                               
                                              downregulated, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

K08A2.5 R10H1.3#2 P W All gene names: nhr-88; F38A1.3; K08A2.5; K08A2.5a.1; K08A2.5a.2; K08A2.5a.3; K08A2.5b.1; K08A2.5b.2; K08A2.5c.1; K08A2.5c.2; K08A2.D; 2D275; CE29513; CE33143; CE33144; WBGene00003678; WP:CE29513; WP:CE33143; WP:CE33144 WormBase description: transposase
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig2D Tc3 genes, Wang                            
                                              et al 2003  S6 removed genes of contamination, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Dauer Enriched, Wang et al 2003  S4 genes pass                                  
                                              two-wayANOVA P0                                                                    

K09F5.2 K09F5.2 P W All gene names: vit-1; K09F5.2; CE04746; NM_076904; WBGene00006925; WP:CE04746; XI345 WormBase description: vit-1
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005  T3 xenobiotic                               
                                              downregulated, Reinke et al 2004, list of genes in                                 
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S6 removed genes of contamination                                 

K11G12.3 K11G12.3 P W All gene names: smf-2; K11G12.3; CE02825; NM_076730; WBGene00004877; WP:CE02825; XH332 WormBase description: transport system membrane protein
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

M162.5 M162.5 P W All gene names: M162.5; M162.5.1; M162.5.2; 5U235; CE23879; WBGene00010931; WP:CE23879
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, fem3 enriched genes, Wang et al 2003                            
                                               S6 removed genes of contamination                                                 

M60.4 M60.3 P W All gene names: M60.4; M60.4b.1; M60.4b.2; M60.4b.3; M60.4b.4; CE02832; CE34063; WBGene00019780; WP:CE02832; WP:CE34063; XI852
                                              
Member of lists (Publications lists):
                                              McElwee et al 2003  T1 targets of                                 
                                              daf-16, Reinke et al 2004, IVb male soma enriched                                  
                                              genes, Wang et al 2003  S6 removed genes of                                        
                                              contamination                                                                      

R05D8.10 R05D8.H P W All gene names: dhs-15; R05D8.10; 5D246; CE21092; NM_071353; WBGene00000978; WP:CE21092 WormBase description: dhs-15 encodes a member of the short chain dehydrogenase/reductase family. WormBase CDS description: alcohol dehydrogenase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Reinke et al 2004, GO categories,                                  
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S6 removed genes of contamination, Wang et al 2003  S4                             
                                              genes pass two-wayANOVA P0, Wang et al 2003  S4 Dauer                              
                                              Enriched                                                                           

R05D8.7 R05D8.E P W All gene names: R05D8.7; 5D234; CE21095; WBGene00019885; WP:CE21095
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

R06C7.4 R06C7.4 P W All gene names: R06C7.4; 1H821; CE06247; WBGene00011063; WP:CE06247
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt herm vs wt male enriched gen, Reinke et al                             
                                              2004, list of genes in cluster E, ViswanathanM et al                               
                                              2005  S2 sir-2.1 regulated, Wang et al 2003  S6 removed                            
                                              genes of contamination                                                             

R07H5.4 R07H5.4 P W All gene names: sdz-27; R07H5.4; 4L953; CE12556; WBGene00011124; WP:CE12556
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, mixed sperm soma,                                
                                              Reinke et al 2004, herm soma enriched genes, Reinke et                             
                                              al 2004, fem3 enriched genes, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, Wang et al 2003  S6 removed genes                              
                                              of contamination                                                                   

R08E5.2 R08E5.2 P W All gene names: R08E5.2; R08E5.2b.1; R08E5.2b.2; R08E5.2b.3; R08E5.2b.4; 5E250; CE12574; CE33294; CE33295; WBGene00019962; WP:CE12574; WP:CE33294; WP:CE33295 WormBase description: cysteine synthase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, McElwee et al 2003  T1 targets of daf-16,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

R09D1.1 R09D1.1 P W All gene names: R09D1.1; 2J734; CE03542; WBGene00011157; WP:CE03542 WormBase description: chitinase
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig4 Mount 15,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

R09D1.3 R09D1.3 P W All gene names: R09D1.3; 2J730; CE03544; WBGene00011159; WP:CE03544 WormBase description: chitinase
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

R09D1.8 R09D1.8 P W All gene names: R09D1.8; 2J750; CE25073; WBGene00011164; WP:CE25073 WormBase description: chitinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, GO categories,                                 
                                              Reinke et al 2004, herm soma enriched genes, Wang et al                            
                                              2003  S6 removed genes of contamination                                            

R107.7 R107.7 P W All gene names: gst-1; R107.7; R107.7.1; R107.7.2; 3K149; CE00302; NM_066605; WBGene00001749; WP:CE00302 WormBase description: gst-1 encodes a putative glutathione S-transferase with highest similarity to the pi class. WormBase CDS description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, mixed oogenesis soma,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

R11.2 R11.2 P W All gene names: R11.2; CE03264; WBGene00011227; WP:CE03264; XQ799
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

R13A5.5 R13A5.5 P W All gene names: ceh-13; R13A5.5; 3I647; CE28767; NM_066254; WBGene00000437; WP:CE28767 WormBase description: a homolog of Hox genes of labial/Hox1 type; affects viability, body shape and anterior patterning during embryogenesis, interacts genetically with hox genes; and is expressed in A, D, E and MS lineages in the early embryo, and in the anterior dorsal hypodermal cells, anterior body wall muscle cells, and in the cells of the prospective ventral nerve cord at the comma stage; and in the ventral nerve cord and and ventral and dorsal hypodermal cells in L1 larvae.
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, McCarroll et al 2004  SFig1-4 conserved w/                                 
                                              Drosoph, Wang et al 2003  S6 removed genes of                                      
                                              contamination, Wang et al 2003  S7 SAGE genes in the                               
                                              dataset, Wang et al 2003  S8 SAGE genes in the dauer                               
                                              exit                                                                               

R13H4.2 R13H4.2 P W All gene names: R13H4.2; 5M317; WBGene00014826
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

T04B2.6 T04B2.6, T04B2.6#2 P W All gene names: dhs-31; T04B2.6; 4K804; CE03613; NM_069415; WBGene00011424; WP:CE03613 WormBase description: dehydrogenase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

T04F8.7 T04F8.7 P W All gene names: T04F8.7; CE03619; WBGene00011445; WP:CE03619; XM294
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, Wang et al 2003  S6 removed genes of                                        
                                              contamination                                                                      

T04H1.7 T04H1.7 P W All gene names: ugt-55; T04H1.7; 5M737; CE31984; WBGene00011452; WP:CE31984 WormBase description: UDP-sugartransferase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              fem3 enriched genes, ViswanathanM et al 2005  S2 daf-16                            
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

T05G11.1 T05G11.1 P W All gene names: T05G11.1; 5Q408; CE18930; WBGene00011505; WP:CE18930 WormBase description: Zinc finger, C2H2 (2 domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, GO categories, Reinke et al 2004, list of                              
                                              genes in cluster E, ViswanathanM et al 2005  S2 daf-16                             
                                              Resveratrol, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

T07D10.4 T07D10.4 P W All gene names: clec-15; T07D10.4; 1N224; WBGene00011584 WormBase description: C-type lectin
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 sir-2.1                             
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

T07G12.4 T07G12.4 P W All gene names: T07G12.4; 4L298; CE13393; WBGene00011595; WP:CE13393 WormBase description: permease
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

T09A12.2 T09A12.2 P W All gene names: T09A12.2; 4I987; CE17231; CE31060; WBGene00020373; WP:CE17231; WP:CE31060 WormBase description: glutathione peroxidase
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

T09F5.2 T09F5.2 P W All gene names: T09F5.2; 5P631; CE13523; WBGene00011666; WP:CE13523
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

T09H2.1 T09H2.1#2 P W All gene names: cyp-34A4; T09H2.1; 5E427; CE18231; NM_071696; WBGene00020386; WP:CE18231 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Custodia et al 2001  T2 Cytochrome                                
                                              P450, ViswanathanM et al 2005  S2 sir-2.1 regulated,                               
                                              Wang et al 2003  S6 removed genes of contamination                                 

T10B10.4 T10B10.4 P W All gene names: T10B10.4; CE31604; WBGene00011681; WP:CE31604; XP811
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster A, Reinke et al 2004, list of genes in cluster                             
                                              order, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

T10H4.5 T10H4.5 P W All gene names: srw-16; T10H4.5; 5P752; CE33826; NM_074381; WBGene00005763; WP:CE33826 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

T11F8.3 T11F8.3 P W All gene names: rme-2; T11F8.3; 4G237; CE22368; NM_068414; WBGene00004374; WP:CE22368 WormBase description: LDL-like receptor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, Fig2b shared                                   
                                              gemlines, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, intrinsic, Reinke et al 2004,                            
                                              wt vs glp-4 enriched genes, Reinke et al 2004, wt males                            
                                              vs glp4 male enriched , Reinke et al 2004, wt herm vs                              
                                              wt male enriched gen, Reinke et al 2004, herm soma                                 
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

T14G12.3 T14G12.3 P W All gene names: FIL-1; tag-18; T14G12.3; CE04964; WBGene00006408; WP:CE04964; XE350
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Wang et al 2003  S6 removed genes of                                       
                                              contamination                                                                      

T19C3.4 T19C3.4 P W All gene names: T19C3.4; 3B236; CE02055; WBGene00020562; WP:CE02055 WormBase description: Polyposis locus protein 1
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Wang et al 2003  S6 removed genes                            
                                              of contamination                                                                   

T19D2.3 T19D2.3 P W All gene names: T19D2.3; CE07516; WBGene00020568; WP:CE07516; XE559
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

T19D7.6 7T19D7.6 P W All gene names: T19D7.6; CE35774; WBGene00020574; WP:CE35774; XB288
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

T23F2.4 T23F2.4 P W All gene names: T23F2.4; CE39781; WBGene00020737; WP:CE39781; XG132
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

T24A6.8 T24A6.8 P W All gene names: nhr-221; T24A6.8; 5E8; CE19590; WBGene00020748; WP:CE19590 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

T24C2.5 T24C2.5 P W All gene names: T24C2.5; CE03719; WBGene00011984; WP:CE03719; XP157
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

T25D10.4 T25D10.4 P W All gene names: T25D10.4; 2G700; CE02061; WBGene00020801; WP:CE02061
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

T28A11.5 T28A11.5 P W All gene names: T28A11.5; 5D745; CE20110; WBGene00020872; WP:CE20110
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, Wang et al 2003  S6 removed genes of                               
                                              contamination                                                                      

W02D7.5 W02D7.5 P W All gene names: W02D7.5; 5I776; CE35793; WBGene00020941; WP:CE35793
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, herm soma enriched                             
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S6 removed genes of contamination                                 

W02D9.6 W02D9.6 P W All gene names: W02D9.6; 1N152; CE14464; WBGene00012212; WP:CE14464
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Reinke et al 2004, list of genes in cluster A,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, herm soma enriched genes,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

W02D9.7 W02D9.7 P W All gene names: W02D9.7; 1N150; CE14466; WBGene00012213; WP:CE14466
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, herm soma enriched genes,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

W03G1.5 W03G1.5 P W All gene names: W03G1.5; 4B256; CE17283; WBGene00021011; WP:CE17283
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

W04D2.2 W04D2.2 P W All gene names: srt-39; W04D2.2; 5M965; CE06540; NM_073728; WBGene00012242; WP:CE06540
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

W04G5.6 W04G5.6#2 P W All gene names: kin-23; W04G5.6; 1M232; CE28099; NM_060569; WBGene00002205; WP:CE28099 WormBase description: kin-23 encodes a predicted protein tyrosine kinase; like KIN-30, KIN-23 contains an unusual K to R substitution in kinase subdomain VII; kin-23 mRNA is expressed strongly during the L1/L2 larval stages, weakly in L3 and L4 stages, and at undetectable levels in adults. WormBase CDS description: tyrosine-protein kinase (KIN15/KIN16 subfamily) (4 domains)
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, ViswanathanM et al 2005  S2 sir-2.1 regulated,                             
                                              Wang et al 2003  S6 removed genes of contamination,                                
                                              Wang et al 2003  S7 SAGE genes in the dataset, Wang et                             
                                              al 2003  S8 SAGE genes in the dauer exit                                           

W05E7.1 W05E7.1 P W All gene names: grd-3; W05E7.1; 4E205; CE34103; NM_067945; WBGene00001692; WP:CE34103 WormBase description: grd-3 encodes a predicted secreted protein that is a member of the C. elegans groundhog gene family; by homology, GRD-3 is predicted to be involved in cell communication, and likely plays a role in antibacterial defense, as its expression is robustly induced upon infection of C. elegans with a gram-negative bacterium; loss of grd-3 activity via RNA-mediated interference (RNAi), however, does not result in any obvious abnormalities; a grd-3 reporter gene is expressed in adults in anterior and posterior hypodermal seam cells, in a pattern that overlaps that of grd-5.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

W05F2.3 W05F2.3 P W All gene names: W05F2.3; 1D936; CE14616; WBGene00021035; WP:CE14616
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Jones et al 2001  T3 20 most abundant                                      
                                              Mixed-stage, Reinke et al 2004, fem1 enriched genes,                               
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004,                                
                                              list of genes in cluster E, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated, Wang et al 2003  S6 removed genes of                            
                                              contamination                                                                      

W07A12.6 W07A12.6 P W All gene names: W07A12.6; 2J447; CE35050; WBGene00012323; WP:CE35050
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, Shen et al 2005  T1 hif-1 depend hypoxia,                             
                                              Wang et al 2003  S6 removed genes of contamination                                 

W07A12.7 W07A12.7 P W All gene names: tag-323; W07A12.7; 2J453; CE20163; WBGene00012324; WP:CE20163
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Jones et al 2001  T3 20 most abundant Dauer,                               
                                              Shen et al 2005  T1 hif-1 depend hypoxia, Wang et al                               
                                              2003  S6 removed genes of contamination, Wang et al                                
                                              2003  S7 SAGE genes in the dataset, Wang et al 2003  S8                            
                                              SAGE genes in the dauer exit                                                       

Y116F11A.6 Y116F11A.ZZ11 P W All gene names: Y116F11A.6; 5U197; CE24159; WBGene00013819; WP:CE24159
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y12A6A.1 Y12A6A.1 P W All gene names: Y12A6A.1; CE19031; WBGene00012439; WP:CE19031; XO238
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y22F5A.1 Y22F5A.1 P W All gene names: nhr-232; Y22F5A.1; 5K739; CE38441; WBGene00012494; WP:CE38441 WormBase description: Zinc finger, C4 type (two domains)
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y22F5A.2 Y22F5A.2 P W All gene names: sri-18; Y22F5A.2; 5K736; CE33726; NM_073239; WBGene00005530; WP:CE33726 WormBase description: 7TM chemoreceptor, sri family
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y37A1B.5 Y37A1B.5 P W All gene names: Y37A1B.5; 4O819; CE19075; WBGene00012538; WP:CE19075
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y37D8A.4 Y37D8A.4 P W All gene names: Y37D8A.4; 3N928; CE20209; WBGene00012546; WP:CE20209
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y38C9B.1 Y38C9B.C P W All gene names: cyp-29A3; Y38C9B.1; Y38C9B.C; 5A539; CE35365; NM_070729; WBGene00021412; WP:CE35365 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes, Wang                             
                                              et al 2003  S6 removed genes of contamination                                      

Y38F1A.8 Y38F1A.8 P W All gene names: Y38F1A.8; 2N290; CE21613; WBGene00012610; WP:CE21613
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster B, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y38F1A.9 Y38F1A.9 P W All gene names: oig-2; Y38F1A.9; 2N298; CE21614; NM_064366; WBGene00003860; WP:CE21614
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y39H10A.7 Y39H10A_224.A P W All gene names: chk-1; Y39H10A.7; Y39H10A.7b.1; Y39H10A.7b.2; Y39H10A_224.A; 5E232; CE26076; CE33867; WBGene00000498; WP:CE26076; WP:CE33867 WormBase description: chk-1 encodes a CHK1-like serine threonin protein kinase that affects fertility.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, male germline, Reinke et al 2004, wt                            
                                              males vs glp4 male enriched , Reinke et al 2004, herm                              
                                              soma enriched genes, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated, Wang et al 2003  S6 removed genes of                            
                                              contamination                                                                      

Y43F8C.2 Y43F8C.2 P W All gene names: nlp-26; Y43F8C.2; Y43F8C.2.1; Y43F8C.2.2; 5U89; CE21900; NM_075401; WBGene00003764; WP:CE21900 WormBase description: nlp-26 encodes a predicted neuropeptide not found in multigene families within C. elegans and is not clearly related to other well-characterized neuropeptides.
                                              
Member of lists (Publications lists):
                                              Bishop et al 2004  T1 Upregulated in                              
                                              vhl-1 vs WT, ViswanathanM et al 2005  S2 sir-2.1                                   
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y44E3B.2 Y44E3B.2 P W All gene names: Y44E3B.2; 1D831; CE39838; WBGene00021553; WP:CE39838 WormBase description: tyrosinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, GO categories,                                 
                                              Reinke et al 2004, IVb male soma enriched genes,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

Y45F10A.2 Y45F10A.2 P W All gene names: puf-3; Y45F10A.2; Y45F10A.2.1; Y45F10A.2.2; 4O276; CE18393; NM_070205; WBGene00004239; WP:CE18393 WormBase description: The puf-3 gene encodes a predicted RNA binding protein that is a member of the conserved PUF (Pumilio and FBF) family of RNA binding proteins; PUF-3 is expressed in the ovary and is required for multiple aspects of early embryogenesis including proper cell cycle timing, spindle positioning, and formation of the polar bodies and pronuclei. WormBase CDS description: Pumilio-family RNA binding domains (aka PUM-HD, Pumilio homology domain)
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, fem1 enriched genes,                                  
                                              Reinke et al 2004, Fig2b shared gemlines, Reinke et al                             
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt males vs                            
                                              glp4 male enriched , Reinke et al 2004, wt herm vs wt                              
                                              male enriched gen, Reinke et al 2004, list of genes in                             
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y46E12A.1 Y119D3_463.D P W All gene names: cnc-6; Y46E12A.1; 3C853; CE26996; NM_065054; WBGene00000560; WP:CE26996
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

Y46H3A.4 Y32G9B_366.B, Y46H3A.C P W All gene names: Y46H3A.4; 5C286; CE24307; WBGene00021600; WP:CE24307
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  Fig6A Ethanol                            
                                              Paraquat, Wang et al 2003  S6 removed genes of                                     
                                              contamination                                                                      

Y46H3A.5 Y32G9B_366.A, Y46H3A.B P W All gene names: Y46H3A.5; 5C288; CE24308; WBGene00021601; WP:CE24308
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y47G7B.2 Y47G7B.2 P W All gene names: Y47G7B.2; 2C996; CE19624; WBGene00021654; WP:CE19624
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

Y48E1B.10 Y48E1B.10, Y48E1B.10#2 P W All gene names: gst-20; Y48E1B.10; 2N898; CE14870; NM_064457; WBGene00001768; WP:CE14870 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              ReichertK et al 2005 T1 xenobiotic                                
                                              induced GSTs, Reinke et al 2004, wt herm vs wt herm                                
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

Y59A8C.E Y59A8C.E P W
                                              
Member of lists (Publications lists):
  Wang et al 2003  S6 removed genes of                               
                                              contamination                                                                      

Y61A9LA_72.F Y61A9LA_72.F P W
                                              
Member of lists (Publications lists):
  Wang et al 2003  S6 removed genes of                               
                                              contamination                                                                      

Y62H9A.5 Y62H9A.5 P W All gene names: Y62H9A.5; CE31124; WBGene00013393; WP:CE31124; XM500
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, wt herm vs wt male                               
                                              enriched gen, Reinke et al 2004, herm soma enriched                                
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

Y62H9A.6 Y62H9A.6 P W All gene names: Y62H9A.6; CE19242; WBGene00013394; WP:CE19242; XM503
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Reinke et al 2004, list of genes in cluster                              
                                              order, Reinke et al 2004, wt herm vs wt male enriched                              
                                              gen, Reinke et al 2004, herm soma enriched genes,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

Y69E1A.5 Y69E1A.5 P W All gene names: Y69E1A.5; 4L720; CE22812; WBGene00013477; WP:CE22812 WormBase description: Phosphatidylethanolamine-binding protein
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y69H2.3 Y69H2.3 P W All gene names: Y69H2.3; Y69H2.3a.1; Y69H2.3a.2; Y69H2.3d.1; Y69H2.3d.2; 5T136; CE32543; CE32544; CE32545; CE32546; WBGene00013481; WP:CE32543; WP:CE32544; WP:CE32545; WP:CE32546
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, ViswanathanM et al 2005  S2 daf-16                                 
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

Y73F8A.11 Y73F8A.J P W All gene names: Y73F8A.11; 4Q75; CE22980; WBGene00013520; WP:CE22980
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt herm                             
                                              enriched gen, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

Y82E9BL.18 Y119D3_465.I P W All gene names: Y82E9BL.18; CE38758; WBGene00044402; WP:CE38758
                                              
Member of lists (Publications lists):
                                              Wang et al 2003  S6 removed genes of                              
                                              contamination                                                                      

ZC204.3 ZC204.3#2 P W All gene names: ZC204.3; 2B945; CE36349; WBGene00022555; WP:CE36349
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

ZC373.2 ZC373.2 P W All gene names: ZC373.2; CE02375; WBGene00013867; WP:CE02375; XK676
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S6 removed genes of contamination                                 

ZC64.4 ZC64.4 P W All gene names: lim-4; nss-1; ZC64.4; CE25675; NM_076268; WBGene00002987; WP:CE25675; XE490 WormBase description: lim-4 encodes a LIM homeodomain protein homologous to murine Lhx6 and L3/Lhx7, and to Drosophila ARROWHEAD; LIM-4 is required for differentiation of AWB chemosensory neurons, for several but not all aspects of RID motor neuron differentiation, expression of ser-2, repulsion from chemosensory repellants, SAA neurite outgrowth, and normal locomotion and head foraging; lim-4 is expressed in AWB, RID, RIV, RMDL, RMDR, RMEV, four SAA neurons, and four SIA neurons. WormBase CDS description: LIM-homeodomain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, ViswanathanM et al 2005  S2                                  
                                              daf-16 Resveratrol, Wang et al 2003  S6 removed genes                              
                                              of contamination                                                                   

ZK1058.9 ZK1058.9 P W All gene names: ZK1058.9; 3F14; CE01107; WBGene00014207; WP:CE01107
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

ZK1086.1 ZK1086.1 P W All gene names: obr-3; ZK1086.1; Bip; CE31672; CE31673; NM_171794; NM_171795; WBGene00014215; WP:CE31672; WP:CE31673; XO418 WormBase description: ZK1086.1 encodes two isoforms of a protein with an N-terminal pleckstrin domain and a C-terminal oxysterol-binding domain; ZK1086.1 has orthologs in Drosophila (CG5077) and humans (OSBPL8; OMIM:606736); ZK1086.1 binds the BMP receptor associated molecule (BRAM) proteins BRA-1 and BRA-2; ZK1086.1 is expressed in pharyngeal muscle, hypodermis, and several neurons; ZK1086.1 is required for normally large body size, and the small body phenotype of ZK1086.1(RNAi) animals is consistent with ZK1086.1 participating in TGF-beta signalling. WormBase CDS description: Yeast hypothetical protein YHG1 like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, ViswanathanM et al 2005  S2 sir-2.1 regulated,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

ZK1127.1 ZK1127.1 P W All gene names: nos-2; ZK1127.1; 2H357; CE05121; NM_063051; WBGene00003784; WP:CE05121 WormBase description: nos-2 encodes one of three genes in C. elegans that contains a putative zinc-binding domain similar to the one found in Drosophila nanos; nos-2 affects incorporation of primordial germ cells into the somatic gonad, is required redundantly with nos-1 to prevent primordial germ cells from dividing in starved animals and to maintain germ cell viability during larval development in hermaphrodites and in males, and also functions together with nos-1 and nos-3 in the hermaphrodite switch from spermatogenesis to oogenesis; nos-2 is expressed in the primordial germ cells around the time of gastrulation from a maternal RNA associated with P granules, and it is expressed coordinately with nos-1in a dynamic fashion until the embryonic 200-cell stage.
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, fem1 enriched                                  
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, list of genes in cluster E, Wang et al 2003                               
                                              S6 removed genes of contamination                                                  

ZK1321.4 ZK1321.4 P W All gene names: ZK1321.4; 2K62; CE32038; WBGene00014262; WP:CE32038
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

ZK218.2 ZK218.2 P W All gene names: ZK218.2; WBGene00013936
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig2D Tc3 genes,                                 
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

ZK355.3 ZK355.E P W All gene names: ZK355.3; 2D216; CE23458; WBGene00022713; WP:CE23458
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class1                                    
                                              elongate lifespan, ViswanathanM et al 2005  S2 daf-16                              
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

ZK430.3 ZK430.3, ZK430.6 P W All gene names: sod-5; ZK430.3; 2E709; CE05080; NM_062378; WBGene00007036; WP:CE05080 WormBase description: superoxide dismutase
                                              
Member of lists (Publications lists):
                                              McElwee et al 2003  Fig4 daf-16 target                            
                                              lifspan, Reinke et al 2004, intrinsic, Reinke et al                                
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, Wang et al 2003  S6 removed genes of                                   
                                              contamination                                                                      

ZK593.2 ZK593.2 P W All gene names: ZK593.2; 4L679; CE06623; WBGene00014002; WP:CE06623
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 daf-16                                
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

ZK632.9 ZK632.9 P W All gene names: ZK632.9; ZK632.9.1; ZK632.9.2; 3K916; CE28193; WBGene00014016; WP:CE28193
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, ViswanathanM et al 2005  S2 sir-2.1                                 
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination                                                                      

ZK682.2 ZK682.2 P W All gene names: ZK682.2; ZK682.2.1; ZK682.2.2; 5J744; CE07636; WBGene00022788; WP:CE07636 WormBase description: sodium/phophate transporter
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S6 removed genes of                                  
                                              contamination                                                                      

ZK742.4 ZK742.4 P W All gene names: ZK742.4; 5I290; CE07640; WBGene00022814; WP:CE07640
                                              
Member of lists (Publications lists):
                                              McElwee et al 2003  T1 targets of                                 
                                              daf-16, ViswanathanM et al 2005  S2 daf-16 Resveratrol,                            
                                              Wang et al 2003  S6 removed genes of contamination                                 

ZK813.1 ZK813.1 P W All gene names: ZK813.1; ZK813.1.1; ZK813.1.2; CE33752; WBGene00022820; WP:CE33752; XE65
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol, Wang et                            
                                              al 2003  S6 removed genes of contamination                                         

ZK813.3 ZK813.3 P W All gene names: ZK813.3; CE29944; WBGene00022822; WP:CE29944; XE59
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, herm soma enriched                               
                                              genes, ViswanathanM et al 2005  S2 sir-2.1 regulated,                              
                                              Wang et al 2003  S6 removed genes of contamination                                 

ZK899.1 ZK899.1 P W All gene names: ZK899.1; CE01118; WBGene00014140; WP:CE01118; XK65
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated, Wang et al 2003  S6 removed genes of                                    
                                              contamination