Romagnolo et al 2002 Fig3b Oxidation, 13 genes

Gene list file name:Romagnolo2002.Fig3b_13Oxidation.txt
Type of gene identifier:MA primer pair (sjj)
Description:Romagnolo et al 2002 Fig3b Oxidation genes  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C05D11.12 C05D11.12 P W All gene names: let-721; C05D11.12; C05D11.12.1; C05D11.12.2; 3H534; CE29662; NM_066014; WBGene00002855; WP:CE29662 WormBase description: The let-721 gene encodes an ortholog of the human gene SIMILAR TO ELECTRON-TRANSFERRING-FLAVOPROTEIN DEHYDROGENASE (ETFDH), which when mutated leads to glutaricaciduria type IIC (OMIM:231675). WormBase CDS description: YAAS
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b Oxidation,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C12D5.7 C12D5.7 P W All gene names: cyp-33A1; C12D5.7; 5I160; CE06809; NM_072587; WBGene00015709; WP:CE06809 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Kwon et al 2004 T1 late-induction                                          
                                              Ethanol-response, Menzel et al 2001  T3 CYP genes,                                 
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Romagnolo et al 2002  Fig3b Oxidation                                              

C44C10.11 C44C10.2 P W All gene names: C44C10.11; CE37713; WBGene00043985; WP:CE37713; XM328
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Oxidation,                            
                                              Wang et al 2003  S4 TransientList, Wang et al 2003  S3                             
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

D1053.1 D1053.1 P W All gene names: gst-42; D1053.1; CE03099; NM_077561; WBGene00001790; WP:CE03099; XM346 WormBase description: gst-42 is orthologous to the human gene GLUTATHIONE TRANSFERASE ZETA-1 (also known as MALEYLACETOACETATE ISOMERASE; GSTZ1; OMIM:603758), which when mutated is thought to lead to a variety of type I tyrosinemia. WormBase CDS description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004  T1 late-repression                               
                                              Ethanol-respon, McCarroll et al 2004  SFig1-4 conserved                            
                                              w/ Drosoph, Reinke et al 2004, list of genes in cluster                            
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002  Fig3b Oxidation, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated, Wang et al 2003  S4                                 
                                              Climbing, Wang et al 2003  S3  genes pass one-way                                  
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

F08F3.7 F08F3.7 P W All gene names: ccp-14A5; cyp-14A5; F08F3.7; 5F900; CE09262; NM_072034; WBGene00000373; WP:CE09262 WormBase description: ccp-14A5 encodes a member of the cytochrome P450 family. WormBase CDS description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Kwon et al 2004 T1 late-induction                                 
                                              Ethanol-response, Menzel et al 2001  T3 CYP genes,                                 
                                              ReichertK et al 2005 T1 xenobiotic induced P450, Reinke                            
                                              et al 2004, fem3 enriched genes, Reinke et al 2004,                                
                                              mixed sperm soma, Reinke et al 2004, GO categories,                                
                                              Romagnolo et al 2002  Fig3b Oxidation, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol, Wang et al 2003  S4                                
                                              TransientList, Wang et al 2003  S3  genes pass one-way                             
                                              ANOVA, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

F35G12.2 F35G12.2 P W All gene names: F35G12.2; F35G12.2.1; F35G12.2.2; F35G12.2.3; F35G12.2.4; 3F659; CE31500; WBGene00009440; WP:CE31500 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. WormBase CDS description: isocitrate dehydrogenase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, Reinke et al 2004, intrinsic, Reinke et al                               
                                              2004, wt vs glp-4 enriched genes, Reinke et al 2004, GO                            
                                              categories, Romagnolo et al 2002  Fig3b Oxidation,                                 
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F37B1.5 F37B1.5 P W All gene names: gst-16; F37B1.5; 2N914; CE09992; NM_064462; WBGene00001764; WP:CE09992 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b Oxidation,                            
                                              Wang et al 2003  S6 removed genes of contamination                                 

F59C6.5 F59C6.5 P W All gene names: F59C6.5; F59C6.5.1; F59C6.5.2; 1L97; CE11464; WBGene00010326; WP:CE11464 WormBase description: NADH ubiquinone oxidoreductase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              Oxidation, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

K01D12.13 K01D12.13 P W All gene names: cdr-7; K01D12.13; 5M890; CE38388; CE38389; WBGene00010472; WP:CE38388; WP:CE38389 WormBase description: glutathione S-transferase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Romagnolo et al 2002  Fig3b Oxidation, Wang                             
                                              et al 2003  S4 Early genes, Wang et al 2003  S3  genes                             
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

R07E5.2 R07E5.2 P W All gene names: prdx-3; R07E5.2; R07E5.2.1; R07E5.2.2; 3F499; CE00657; NM_065491; WBGene00011110; WP:CE00657; ceprx1 WormBase description: Mer5 (mouse)
                                              
Member of lists (Publications lists):
                                              Golden et al 2004, N2 vs daf-2 age                                
                                              different gene, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Romagnolo et al 2002  Fig3b Oxidation,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 Climbing, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

T10B9.7 T10B9.7 P W All gene names: cyp-13A2; T10B9.7; 2K74; CE01659; NM_063708; WBGene00011676; WP:CE01659 WormBase description: cytochrome P450
                                              
Member of lists (Publications lists):
                                              Menzel et al 2001  T3 CYP genes,                                  
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, fem3 enriched genes, Reinke et al                               
                                              2004, mixed sperm soma, Reinke et al 2004, herm soma                               
                                              enriched genes, Reinke et al 2004, GO categories,                                  
                                              Reinke et al 2004, list of genes in cluster B,                                     
                                              Romagnolo et al 2002  Fig3b Oxidation                                              

T20H4.5 T20H4.5 P W All gene names: T20H4.5; T20H4.5.1; T20H4.5.2; 3I324; CE00832; WBGene00020636; WP:CE00832 WormBase description: The T20H4.5 gene encodes an ortholog of the human gene NADH DEHYDROGENASE-UBIQUINONE FE-S PROTEIN 8 23 KDA SUBUNIT; MITOCHONDRIAL COMPLEX I TYKY SUBUNIT (NDUFS8; OMIM:602141), which when mutated leads to Leigh syndrome (OMIM:256000); the T20H4.5 protein is predicted to be mitochondrial with 52% accuracy. WormBase CDS description: Mitochondrial complex I 23K chain
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster C, Romagnolo et al 2002  Fig3b Oxidation,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Climbing, Wang et al 2003  S3  genes pass                              
                                              one-way ANOVA, Wang et al 2003  S4 genes pass                                      
                                              two-wayANOVA P0                                                                    

ZC395.2 ZC395.2 P W All gene names: clk-1; coq-1; coq-7; ZC395.2; 3G369; CE01438; NM_065727; WBGene00000536; WP:CE01438 WormBase description: The clk-1 gene partially controls lifespan in vivo; it encodes a homolog of the yeast COQ9 protein, and is necessary for the biosynthesis of ubiquinone (UQ(9)) from demethoxyubiquinone (DMQ(9)).
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  T2 lifespan and                                 
                                              Dauer, McCarroll et al 2004  SFig5 conserved w/ yeast,                             
                                              McCarroll et al 2004  SFig1-4 conserved w/ Drosoph,                                
                                              Romagnolo et al 2002  Fig3b Oxidation, Roy et al 2002                              
                                              S3 muscle genes, ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated