Jiang et al 2001 Fig1 hermaphrodite-enriched TF, 23 genes

Gene list file name:Jiang2001.Fig1_hermaphrodite-enriched_TF.txt
Type of gene identifier:Cosmid name
Description:Jiang et al 2001 Fig1 hermaphrodite-enriched Transcriptional
factors  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C07A12.5 C07A12.5 P W All gene names: spr-3; C07A12.5; CE36266; CE36267; WBGene00005008; WP:CE36266; WP:CE36267; XF135 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Reinke et al 2004, fem1                                 
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, mixed oogenesis soma,                            
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              list of genes in cluster E, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

C18E3.2 C18E3.2 P W All gene names: C18E3.2; C18E3.2.1; C18E3.2.2; 1E779; CE30249; WBGene00015971; WP:CE30249 WormBase description: The C18E3.2 gene encodes a homolog of Swp73/BAF60, a component of the SWI/SNF complex that is conserved from yeast to mammals and that is involved in chromatin remodeling; C18E3.2 is probably required during mitosis of the T cells for asymmetric cell division.
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Lund et al 2002  Fig3D                                  
                                              Oocyte-en, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C27A12.2 C27A12.2 P W All gene names: C27A12.2; 1G621; CE08411; WBGene00016154; WP:CE08411 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Reinke et al 2004, fem1                                 
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, oogenesis enriched                               
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              list of genes in cluster E, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

C27A12.3 C27A12.3 P W All gene names: tag-146; C27A12.3; 1G615; CE38999; WBGene00006492; WP:CE38999 WormBase description: zinc finger protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Reinke et al 2004, fem1                                 
                                              enriched genes, Reinke et al 2004, wt vs glp-4 enriched                            
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, list of genes in cluster E,                                     
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C27B7.5 C27B7.5 P W All gene names: C27B7.5; 4J667; CE03034; WBGene00007762; WP:CE03034 WormBase description: Zinc finger, CCHC class
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Jones et al 2001  Non dauer                             
                                              genes P<0.05, Reinke et al 2004, list of genes in                                  
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, Fig2b shared gemlines, Reinke et al                             
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt males vs                            
                                              glp4 male enriched , Reinke et al 2004, wt herm vs wt                              
                                              male enriched gen, Reinke et al 2004, GO categories,                               
                                              Romagnolo et al 2002  Fig3b TF, ViswanathanM et al 2005                            
                                               S2 sir-2.1 regulated                                                              

C29F7.5 C29F7.5 P W All gene names: fkh-4; tag-39; C29F7.5; CE08446; NM_077837; WBGene00001436; WP:CE08446; XO46 WormBase description: fkh-4 encodes a member of the forkhead domain transcription factor family. WormBase CDS description: fork head domain protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Reinke et al 2004, fem1                                 
                                              enriched genes, Reinke et al 2004, mixed oogenesis                                 
                                              soma, Reinke et al 2004, GO categories, ViswanathanM et                            
                                              al 2005  S2 sir-2.1 regulated, ViswanathanM et al 2005                             
                                              S2 daf-16 Resveratrol                                                              

C32F10.6 nhr-2 P W All gene names: crf-2; nhr-2; C32F10.6; C32F10.7; 1G396; CE39002; NM_059288; WBGene00003601; WP:CE39002 WormBase description: nhr-2 encodes a member of the nuclear hormone receptor family that is required for embryonic viability and morphogenesis; expressed during embryogenesis. WormBase CDS description: nuclear homone receptor
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster E, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

F19B10.9 F19B10.9 P W All gene names: sea-1; tbx-18; F19B10.9; CE09476; WBGene00004750; WP:CE09476
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Jones et al 2001  Non dauer                             
                                              genes P<0.05, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004, GO                             
                                              categories, Reinke et al 2004, list of genes in cluster                            
                                              E, Romagnolo et al 2002  Fig3b TF, ViswanathanM et al                              
                                              2005  S2 daf-16 Resveratrol, ViswanathanM et al 2005                               
                                              S2 sir-2.1 regulated                                                               

F32E10.2 F32E10.2 P W All gene names: F32E10.2; 4I341; CE04475; WBGene00017990; WP:CE04475 WormBase description: chromo domain of heterochromatin protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Lund et al 2002   Fig3C                                 
                                              Germline-intrinsic, Reinke et al 2004, list of genes in                            
                                              cluster F, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004, GO                             
                                              categories                                                                         

F44A6.2 sex-1 P W All gene names: nhr-24; sex-1; F44A6.2; F44A6.2.1; F44A6.2.2; CE03323; NM_077312; WBGene00004786; WP:CE03323; XK820; cnr14 WormBase description: sex-1 encodes a DNA-binding protein that is a member of the nuclear hormone receptor superfamily of transcriptional regulators; during embryonic development, SEX-1 functions as an X chromosome signal element that transmits the primary sex-determination signal by negatively regulating transcription of xol-1, a gene whose expression levels correlate with hermaphrodite or male development (low xol-1 levels result in hermaphrodite development, high xol-1, in that of males); in vivo, SEX-1 can associate with extrachromosomal arrays containing the xol-1 promoter, indicating that SEX-1's affect on xol-1 transcription is likely to be direct; SEX-1 localizes to nuclei from oogenesis through mid-embryogenesis, with highest levels of expression visible during early gastrulation (28-100-cell-stage); the SEX-1 expression pattern appears to be similar in hermaphrodites and males. WormBase CDS description: nuclear hormone receptor
                                              
Member of lists (Publications lists):
                                              ViswanathanM et al 2005  S2 sir-2.1                               
                                              regulated                                                                          

F44E2.7 F44E2.7 P W All gene names: F44E2.7; F44E2.7b.1; F44E2.7b.2; F44E2.7b.3; F44E2.7b.4; F44E2.7b.5; 3J936; CE24975; CE29802; CE30994; CE30995; WBGene00018420; WP:CE24975; WP:CE29802; WP:CE30994; WP:CE30995
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Jones et al 2001  Non dauer                             
                                              genes P<0.05, Reinke et al 2004, fem1 enriched genes,                              
                                              Reinke et al 2004, list of genes in cluster order,                                 
                                              Reinke et al 2004, oogenesis enriched genes, Reinke et                             
                                              al 2004, wt vs glp-4 enriched genes, Reinke et al 2004,                            
                                              wt herm vs wt male enriched gen, Reinke et al 2004,                                
                                              list of genes in cluster E, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

F45E4.9 F45E4.9 P W All gene names: hmg-5; F45E4.9; 4I410; CE10508; NM_068844; WBGene00001975; WP:CE10508
                                              
Member of lists (Publications lists):
                                              Baugh et al 2005, PAL-1 target genes,                             
                                              Jiang et al 2001  Fig1 hermaphrodite-enriched TF,                                  
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, Reinke et al 2004, list of genes                             
                                              in cluster E, ViswanathanM et al 2005  S2 sir-2.1                                  
                                              regulated                                                                          

F53A2.5 F53A2.5 P W All gene names: dro-1; F53A2.5; 3O431; CE16097; NM_067349; WBGene00001092; WP:CE16097 WormBase description: Archael histone like
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, McCarroll et al 2004                                    
                                              SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1                              
                                              enriched genes, Reinke et al 2004, wt vs glp-4 enriched                            
                                              genes, Reinke et al 2004, oogenesis enriched genes                                 

F55F8.4 F55F8.4 P W All gene names: tag-326; F55F8.4; F55F8.4.1; F55F8.4.2; F55F8.4.3; 1G222; CE11194; WBGene00018892; WP:CE11194
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, McCarroll et al 2004                                    
                                              SFig1-4 conserved w/ Drosoph, Reinke et al 2004, list                              
                                              of genes in cluster F, Reinke et al 2004, fem1 enriched                            
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F57C9.3 F57C9.3 P W All gene names: F57C9.3; 1F407; CE32682; WBGene00019010; WP:CE32682
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Lund et al 2002  Fig3D                                  
                                              Oocyte-en, Reinke et al 2004, list of genes in cluster                             
                                              order, Reinke et al 2004, list of genes in cluster E,                              
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

K07A1.12 lin-53 P W All gene names: lin-53; rba-2; K07A1.12; K07A1.12.1; K07A1.12.2; 1K196; CE16234; NM_060151; WBGene00003036; WP:CE16234 WormBase description: chromatin assembly factor 1 P55 subunit like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Reinke et al 2004, list of genes in cluster F,                            
                                              Reinke et al 2004, fem1 enriched genes, Reinke et al                               
                                              2004, list of genes in cluster order, Reinke et al                                 
                                              2004, oogenesis enriched genes, Reinke et al 2004, wt                              
                                              vs glp-4 enriched genes, Reinke et al 2004, wt herm vs                             
                                              wt male enriched gen, ViswanathanM et al 2005  S2                                  
                                              sir-2.1 regulated                                                                  

R04B5.4 nhr-12 P W All gene names: nhr-12; R04B5.4; 5K564; CE06214; NM_073188; WBGene00003611; WP:CE06214 WormBase description: Zinc finger, C4 type (two domains)
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, IVb male soma                                  
                                              enriched genes, ViswanathanM et al 2005  S2 sir-2.1                                
                                              regulated, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

R11H6.5 R11H6.5 P W All gene names: R11H6.5; 5P92; CE12778; WBGene00011253; WP:CE12778 WormBase description: Human NF45 protein like
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, McCarroll et al 2004                                    
                                              SFig1-4 conserved w/ Drosoph, Reinke et al 2004, fem1                              
                                              enriched genes, Reinke et al 2004, list of genes in                                
                                              cluster order, Reinke et al 2004, oogenesis enriched                               
                                              genes, Reinke et al 2004, wt vs glp-4 enriched genes,                              
                                              Reinke et al 2004, wt herm vs wt male enriched gen,                                
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              list of genes in cluster E, ViswanathanM et al 2005  S2                            
                                              sir-2.1 regulated                                                                  

T07G12.10 T07G12.10 P W All gene names: zim-2; T07G12.10; T07G12.10.1; T07G12.10.2; 4L323; CE29521; WBGene00011600; WP:CE29521 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Reinke et al 2004, list of                              
                                              genes in cluster order, Reinke et al 2004, list of                                 
                                              genes in cluster E                                                                 

T07G12.11 T07G12.11 P W All gene names: zim-3; T07G12.11; 4L325; CE21166; WBGene00011601; WP:CE21166 WormBase description: Zinc finger, C2H2 type
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Lund et al 2002   Fig3C                                 
                                              Germline-intrinsic, Reinke et al 2004, fem1 enriched                               
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen, Reinke et                             
                                              al 2004, GO categories, Reinke et al 2004, list of                                 
                                              genes in cluster E, ViswanathanM et al 2005  S2 sir-2.1                            
                                              regulated                                                                          

T13F2.2 T13F2.2 P W All gene names: T13F2.2; T13F2.2.1; T13F2.2.2; 4K562; CE13621; WBGene00011743; WP:CE13621 WormBase description: single-stranded DNA binding protein P9
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Lund et al 2002  Fig3D                                  
                                              Oocyte-en, Reinke et al 2004, fem1 enriched genes,                                 
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, oogenesis enriched genes, Reinke et al                                 
                                              2004, GO categories, ViswanathanM et al 2005  S2                                   
                                              sir-2.1 regulated                                                                  

T23G7.1 T23G7.1 P W All gene names: dpl-1; mex-4; T23G7.1; 2J461; CE21197; NM_063556; WBGene00001061; WP:CE21197 WormBase description: dpl-1 encodes a homolog of mammalian DP required for embryonic asymmetry. WormBase CDS description: transcription factor DP-1
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, McCarroll et al 2004                                    
                                              SFig1-4 conserved w/ Drosoph, ViswanathanM et al 2005                              
                                              S2 sir-2.1 regulated                                                               

Y14H12B.1 Y14H12B.1 P W All gene names: Y14H12B.1; 2E225; CE21365; CE32075; CE39810; WBGene00021191; WP:CE21365; WP:CE32075; WP:CE39810 WormBase description: zinc-finger protein
                                              
Member of lists (Publications lists):
                                              Jiang et al 2001  Fig1                                            
                                              hermaphrodite-enriched TF, Reinke et al 2004, list of                              
                                              genes in cluster F, Reinke et al 2004, fem1 enriched                               
                                              genes, Reinke et al 2004, list of genes in cluster                                 
                                              order, Reinke et al 2004, oogenesis enriched genes,                                
                                              Reinke et al 2004, wt vs glp-4 enriched genes, Reinke                              
                                              et al 2004, wt herm vs wt male enriched gen,                                       
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated