Romagnolo et al 2002 Fig3b signaling, 82 genes

Gene list file name:Romagnolo2002.Fig3b_82signaling.txt
Type of gene identifier:MA primer pair (sjj)
Description:Romagnolo et al 2002 Fig3b 82 signaling  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0212.5 B0212.5 P W All gene names: nss-2; osm-9; B0212.5; 4E316; CE20445; NM_067971; WBGene00003889; WP:CE20445 WormBase description: The osm-9 gene encodes a capsaicin receptor homolog involved in sensory responses to a subset of chemical stimuli and to ASH neuron-mediated osmotic and mechanical stimuli; OSM-9 is also involved in adaptation to volatile odorants and salts. WormBase CDS description: olfacory channel
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              signaling, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol                                                                        

B0285.9 B0285.9 P W All gene names: ckb-2; B0285.9; 3F459; CE33591; NM_065479; WBGene00000512; WP:CE33591 WormBase description: choline kinase
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Non dauer genes                                 
                                              P<0.05, Reinke et al 2004, list of genes in cluster                                
                                              order, Reinke et al 2004, list of genes in cluster C,                              
                                              Romagnolo et al 2002 Fig5 genes in let-60 timecour,                                
                                              Romagnolo et al 2002  Fig3b signaling, ViswanathanM et                             
                                              al 2005  S2 daf-16 Resveratrol, Wang et al 2003  S3                                
                                              genes pass one-way ANOVA, Wang et al 2003  S4 Early                                
                                              genes, Wang et al 2003  S4 genes pass two-wayANOVA P0                              

B0432.5 B0432.5 P W All gene names: cat-2; B0432.5; 2A549; CE32103; CE37742; NM_061287; NM_182103; WBGene00000296; WP:CE32103; WP:CE37742 WormBase description: cat-2 encodes a putative tyrosine hydroxylase that affects dopamine levels that in turn affect locomotory slowing in response to food; expressed in dopamanergic as well as other neurons, male spicules, and male ray neurons.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Portman et al 2004 T1 10                                     
                                              previously-known ray gene, Romagnolo et al 2002  Fig3b                             
                                              signaling                                                                          

C01B7.4 C01B7.4 P W All gene names: tag-117; C01B7.4; 5J272; CE06728; WBGene00006467; WP:CE06728 WormBase description: This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial. WormBase CDS description: guanylate kinase
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Reinke et al 2004, list of genes                             
                                              in cluster order, Reinke et al 2004, list of genes in                              
                                              cluster B, Romagnolo et al 2002  Fig3b signaling                                   

C01F1.4 C01F1.4 P W All gene names: C01F1.4; 2E569; CE06745; WBGene00015299; WP:CE06745
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

C02H7.2 C02H7.2 P W All gene names: C02H7.2; CE06758; WBGene00015364; WP:CE06758; XB352
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C07G3.7 C07G3.7 P W All gene names: srbc-35; C07G3.7; 5D968; NM_071574; WBGene00015575
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol,                                    
                                              ViswanathanM et al 2005 S2 Resveratrol regulate WT                                 

C09D8.1 C09D8.2 P W All gene names: ptp-3; ptp-3A; ptp-3B; ypp-1; C09D8.1; 2L301; CE30244; CE30245; CE32793; WBGene00004215; WP:CE30244; WP:CE30245; WP:CE32793; YPP/1 WormBase description: ptp-3 encodes a receptor-like tyrosine phosphatase orthologous to the LAR (Leukocyte Common Antigen Related, OMIM:179590) subfamily of receptor-like tyrosine phosphatases that contain extracellular immunoglobulin-like and fibronectin type III domains and have been implicated in linking cell adhesion to intracellular phosphotyrosine levels; PTP-3 plays a role in gastrulation and epidermal development and functions partly redundantly with the VAB-1 Eph receptor and ephrins VAB-2 and EFN-4 to regulate embryonic morphogenesis; PTP-3 is expressed in many tissues during early embryogenesis, but expression later becomes localized to neuronal processes and epithelial adherens junctions.
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              signaling, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C13D9.4 C13D9.4 P W All gene names: srsx-11; C13D9.4; 5F456; CE38148; NM_071937; WBGene00015736; WP:CE38148 WormBase description: 7TM chemoreceptor, srsx family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

C16D6.2 C16D6.2 P W All gene names: C16D6.2; CE37317; WBGene00007635; WP:CE37317; XN154 WormBase description: 7 transmembrane receptor (rhodopsin family)
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S6 removed genes of contamination                                         

C17B7.1 C17B7.1 P W All gene names: str-63; C17B7.1; 5D831; CE16849; NM_071530; WBGene00006126; WP:CE16849 WormBase description: 7TM chemoreceptor, str family
                                              
Member of lists (Publications lists):
                                              Murphy et al 2003  Fig2 Class2 shorten                            
                                              lifespan, Romagnolo et al 2002  Fig3b signaling,                                   
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C17F4.6 C17F4.6 P W All gene names: gcy-19; C17F4.6; 2D542; CE36790; NM_062090; WBGene00001544; WP:CE36790 WormBase description: gcy-19 encodes a predicted transmembrane guanylyl cyclase; as loss of gcy-19 activity via RNA-mediated interference does not result in any abnormalities, the precise role of GCY-19 in C. elegans development and/or behavior is not yet known; by sequence similarity, however, GCY-19 can be predicted to function in chemosensory signal transduction. WormBase CDS description: guanylate cyclase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

C18F10.4 C18F10.4 P W All gene names: srg-1; C18F10.4; 3H344; CE33270; NM_065965; WBGene00005159; WP:CE33270 WormBase description: 7TM chemoreceptor, srg family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002 Fig5 genes in                                
                                              let-60 timecour, Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C29A12.4 C29A12.4 P W All gene names: C29A12.4; 5L325; CE25791; NM_073366; WBGene00007799; WP:CE25791 WormBase description: neurexin I like
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              signaling, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S4 TransientList, Wang et                            
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 genes pass two-wayANOVA P0                                                      

C31A11.3 C31A11.3 P W All gene names: srbc-83; C31A11.3; 5Q773; CE38039; NM_074715; WBGene00007831; WP:CE38039 WormBase description: 7TM receptor, srbc family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C33F10.8 C33F10.8 P W All gene names: C33F10.8; 2F114; CE29695; WBGene00016356; WP:CE29695 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function. WormBase CDS description: protein tyrosine phosphatase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, fem3 enriched genes,                            
                                              Reinke et al 2004, shared sperm, Romagnolo et al 2002                              
                                              Fig3b signaling                                                                    

C36C5.2 C36C5.2 P W All gene names: srab-8; C36C5.2; 5D647; CE08591; NM_071474; WBGene00016471; WP:CE08591 WormBase description: 7TM chemoreceptor, srab family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

C36C5.6 C36C5.6 P W All gene names: srab-9; C36C5.6; 5D618; CE08595; NM_071461; WBGene00016475; WP:CE08595 WormBase description: 7TM chemoreceptor, srab family
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig1 aging-regulated                             
                                              genes, Romagnolo et al 2002  Fig3b signaling,                                      
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

C36E8.4 C36E8.4 P W All gene names: C36E8.4; 3F107; CE31439; WBGene00007983; WP:CE31439
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              signaling, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

C38C3.4 C38C3.4 P W All gene names: C38C3.4; 5B961; CE30257; CE35255; WBGene00016513; WP:CE30257; WP:CE35255 WormBase description: protein kinase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S4 genes                              
                                              pass two-wayANOVA P0                                                               

C44C3.1 C44C3.1 P W All gene names: srw-124; C44C3.1; 5D455; CE08707; NM_071409; WBGene00005871; WP:CE08707 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C44C3.6 C44C3.6 P W All gene names: srw-117; C44C3.6; 5D458; CE08712; NM_071411; WBGene00005864; WP:CE08712 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

C50B6.10 C50B6.10 P W All gene names: str-4; C50B6.10; 5N820; CE15727; NM_073906; WBGene00006072; WP:CE15727 WormBase description: 7TM receptor
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

C50E10.8 C50E10.8 P W All gene names: sre-56; C50E10.8; 2M615; CE19762; NM_064216; WBGene00016831; WP:CE19762 WormBase description: 7TM chemoreceptor, sre family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

F14F4.1 F14F4.1 P W All gene names: F14F4.1; CE17670; WBGene00008808; WP:CE17670; XP542 WormBase description: 7 transmembrane receptor (rhodopsin family)
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

F14F8.7 F14F8.7 P W All gene names: srw-36; F14F8.7; 5R163; CE18591; NM_074823; WBGene00005783; WP:CE18591 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F19B2.3 F19B2.3 P W All gene names: srw-39; F19B2.3; F19B2.F; 5U638; CE39725; NM_075487; WBGene00005786; WP:CE39725 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

F20E11.2 F20E11.2 P W All gene names: srsx-2; F20E11.2; 5R916; CE38173; NM_075009; WBGene00008982; WP:CE38173
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F21F8.8 F21F8.8 P W All gene names: str-137; F21F8.8; 5I756; NR_000556; WBGene00006185
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

F22B8.3 F22B8.3 P W All gene names: F22B8.3; 5Q569; CE15881; WBGene00009046; WP:CE15881
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

F22F7.5 F22F7.5 P W All gene names: ckb-4; F22F7.5; 5C584; CE17695; NM_071172; WBGene00000514; WP:CE17695 WormBase description: choline kinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, list of genes in                               
                                              cluster order, Reinke et al 2004, list of genes in                                 
                                              cluster C, Romagnolo et al 2002  Fig3b signaling,                                  
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S4 Early genes, Wang et al 2003  S3  genes                                
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F22H10.1 F22H10.1 P W All gene names: F22H10.1; CE35505; WBGene00017725; WP:CE35505; XR315 WormBase description: protein kinase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

F25G6.3 F25G6.3 P W All gene names: acr-16; F25G6.3; 5J43; CE09639; CE32878; Ce21; NM_072806; WBGene00000055; WP:CE09639; WP:CE32878 WormBase description: acr-16 encodes an alpha-7-like homomer-forming subunit of the nicotinic acetylcholine receptor (nAChR) superfamily orthologous to human nicotinic cholinergic receptor alpha 7 (CHRNA7; OMIM:118511; possibly associated with schizophrenia and juvenile myoclonic epilepsy); ACR-16 functions as a ligand-gated ion channel that probably regulates fast action of acetylcholine at neuromuscular junctions and in the nervous system; ACR-16 is active as a homomeric receptor and responds robustly to acetylcholine when expressed in Xenopus oocytes.
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3B neuro-specific                             
                                              genes, Romagnolo et al 2002  Fig3b signaling, Wang et                              
                                              al 2003  S4 TransientList, Wang et al 2003  S3  genes                              
                                              pass one-way ANOVA, Wang et al 2003  S4 genes pass                                 
                                              two-wayANOVA P0                                                                    

F26D2.7 F26D2.7 P W All gene names: str-55; F26D2.7; 5Q896; CE17704; NM_074748; WBGene00006120; WP:CE17704
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F35E2.7 F35E2.7 P W All gene names: F35E2.7; 1M306; CE17776; WBGene00009414; WP:CE17776
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002 Fig5 genes in                                
                                              let-60 timecour, Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F36G9.5 F36G9.5 P W All gene names: sru-22; F36G9.5; 5Q450; CE15982; NM_074604; WBGene00005685; WP:CE15982 WormBase description: 7TM receptor
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

F39B2.5 F39B2.5 P W All gene names: F39B2.5; F39B2.5.1; F39B2.5.2; 1P354; CE34485; WBGene00009556; WP:CE34485 WormBase description: Src homology domain 2
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, intrinsic, Reinke                              
                                              et al 2004, wt vs glp-4 enriched genes, Romagnolo et al                            
                                              2002  Fig3b signaling                                                              

F40H7.2 F40H7.2 P W All gene names: srx-108; F40H7.2; 2D995; CE10200; NM_062221; WBGene00005999; WP:CE10200 WormBase description: 7TM chemoreceptor, srx family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

F44F4.7 F44F4.7 P W All gene names: sra-12; F44F4.7; CE30668; WBGene00005038; WP:CE30668 WormBase description: 7TM chemoreceptor, sra family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

F47G9.1 F47G9.1 P W All gene names: F47G9.1; F47G9.1.1; F47G9.1.2; 5L804; CE05883; WBGene00009829; WP:CE05883 WormBase description: Fugu S31III125 protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b signaling,                                    
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S5 genes common to feeding ANOVA, Wang et al                              
                                              2003  S3  genes pass one-way ANOVA                                                 

F52C12.4 F52C12.4 P W All gene names: F52C12.4; 4C711; CE31535; WBGene00018681; WP:CE31535
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              signaling                                                                          

F53A9.5 F53A9.5 P W All gene names: F53A9.5; CE02765; WBGene00018728; WP:CE02765; XJ313 WormBase description: G-protein coupled receptor
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

F53E10.2 F53E10.2 P W All gene names: acr-17; F53E10.2; 5D91; CE10922; CE36860; WBGene00000056; WP:CE10922; WP:CE36860 WormBase description: an ortholog of alpha subunit of nicotinic acetylcholine receptor (nAChR).
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

F55C5.9 F55C5.9 P W All gene names: srh-16; F55C5.9; 5M773; CE33111; NM_073683; WBGene00005241; WP:CE33111 WormBase description: G-protein coupled receptor, srh family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

H24O09.1 H24O09.D P W All gene names: srbc-40; H24O09.1; 5B194; CE35332; NM_070903; WBGene00019242; WP:CE35332 WormBase description: 7TM chemoreceptor, srbc family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

K02E10.1 K02E10.1 P W All gene names: K02E10.1; CE39511; WBGene00019317; WP:CE39511; XD119 WormBase description: GTP-binding protein
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

K03A1.5 K03A1.5 P W All gene names: sur-5; K03A1.5; CE04713; NM_076828; WBGene00006351; WP:CE04713; XH920 WormBase description: sur-5 encodes a protein with high similarity to H. sapiens Acetoacetyl-coenzyme A synthetase; sur-5 negatively regulates let-60 during vulval induction, based on genetic analysis, and genetically synergises with lin-45 with respect to larval death, uncoordinated movement and egg-laying defects; sur-5 is strongly expressed in most cells of C. elegans, including the VPCs and is localized primarily to the nucleus. WormBase CDS description: acetyl-coenzyme A synthetase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              Wang et al 2003  S4 Early genes, Wang et al 2003  S3                               
                                              genes pass one-way ANOVA, Wang et al 2003  S4 genes                                
                                              pass two-wayANOVA P0                                                               

K03D3.9 K03D3.9 P W All gene names: K03D3.9; WBGene00043407
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002 Fig5 genes in                                
                                              let-60 timecour, Romagnolo et al 2002  Fig3b signaling                             

K04C1.1 K04C1.1 P W All gene names: srg-37; K04C1.1; CE06085; NM_077970; WBGene00005194; WP:CE06085; XO852
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

R02D3.2 R02D3.2 P W All gene names: cogc-8; R02D3.2; 4A995; CE18096; WBGene00019820; WP:CE18096
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              signaling, ViswanathanM et al 2005  S2 sir-2.1                                     
                                              regulated                                                                          

R05G6.8 R05G6.8 P W All gene names: plc-4; R05G6.8; 4I274; CE07421; NM_068812; WBGene00004039; WP:CE07421 WormBase description: phospholipase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt herm vs wt male                             
                                              enriched gen, Romagnolo et al 2002  Fig3b signaling,                               
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T01C4.6 T01C4.6 P W All gene names: srx-36; T01C4.6; 5H606; CE36562; NM_072406; WBGene00005927; WP:CE36562 WormBase description: 7TM chemoreceptor, srx family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T01H10.3 T01H10.3 P W All gene names: T01H10.3; CE36663; WBGene00011356; WP:CE36663; XM735 WormBase description: nicotinic acetylcholine receptor
                                              
Member of lists (Publications lists):
                                              Link et al 2003  T2 Abeta induced,                                
                                              Romagnolo et al 2002  Fig3b signaling, ViswanathanM et                             
                                              al 2005  S2 sir-2.1 regulated                                                      

T02B11.2 T02B11.2 P W All gene names: str-53; T02B11.2; 5B353; NR_000480; WBGene00006118
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, wt vs glp-4                                    
                                              enriched genes, Reinke et al 2004, wt males vs glp4                                
                                              male enriched , Reinke et al 2004, spermatogenesis                                 
                                              enriched genes, Reinke et al 2004, wt herm vs wt herm                              
                                              enriched gen, Reinke et al 2004, fem3 enriched genes,                              
                                              Reinke et al 2004, shared sperm, Romagnolo et al 2002                              
                                              Fig3b signaling                                                                    

T02D1.4 T02D1.4 P W All gene names: T02D1.4; 4S343; CE16324; WBGene00011371; WP:CE16324
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T05B4.5 T05B4.5 P W All gene names: srw-132; T05B4.5; 5E576; CE34987; NM_071741; WBGene00005879; WP:CE34987 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T05C3.4 T05C3.4 P W All gene names: grl-18; T05C3.4; 5F960; CE39030; WBGene00001727; WP:CE39030
                                              
Member of lists (Publications lists):
                                              Jones et al 2001  Dauer specific genes                            
                                              P<0.05, Romagnolo et al 2002  Fig3b signaling, Wang et                             
                                              al 2003  S7 SAGE genes in the dataset, Wang et al 2003                             
                                              S8 SAGE genes in the dauer exit                                                    

T06G6.2 T06G6.2 P W All gene names: sra-24; T06G6.2; 1N295; CE33445; NM_060819; WBGene00005050; WP:CE33445 WormBase description: 7TM chemoreceptor, sra family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T08B6.7 T08B6.7 P W All gene names: str-170; T08B6.7; 4F641; CE17228; NM_068262; WBGene00006214; WP:CE17228 WormBase description: 7TM chemoreceptor, str family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

T09E11.7 T09E11.7 P W All gene names: T09E11.7; 1M943; CE13509; WBGene00011656; WP:CE13509
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

T12A2.13 T12A2.13 P W All gene names: srg-6; T12A2.13; 3H352; CE07482; NM_065969; WBGene00005164; WP:CE07482 WormBase description: 7TM chemoreceptor, srg family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

T23D5.7 T23D5.7 P W All gene names: str-19; T23D5.7; 5Q220; CE36206; NM_074519; WBGene00006086; WP:CE36206 WormBase description: 7TM receptor
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T26H10.1 K03B8.10 P W All gene names: acr-4; des-2; T26H10.1; CE21208; NM_073497; WBGene00000955; WP:CE21208 WormBase description: des-2 encodes an alpha subunit of nicotinic acetylcholine receptor (nAChR), predicted to be a ligand-gated ion channel regulating the fast action of acetylcholine at neuromuscular junctions and in the nervous system; DES-2 is coexpressed with and genetically interacts with DEG-3, which which it probably forms heteromultimers, and DES-2 falls into the 'DEG-3' class of nAChR subunits, probably unique to nematodes, which includes DEG-3, ACR-5, ACR-17, ACR-18 ACR-20, and ACR-23. WormBase CDS description: nicotinic acetylcholine receptor
                                              
Member of lists (Publications lists):
                                              Lund et al 2002  Fig3B neuro-specific                             
                                              genes, Romagnolo et al 2002  Fig3b signaling                                       

T26H2.7 T26H2.7 P W All gene names: T26H2.7; 5T697; CE16492; WBGene00012068; WP:CE16492
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

T28F12.3 T28F12.3 P W All gene names: let-341; sos-1; T28F12.3; T28F12.B; Y61A9LA_73.A; 5E996; CE36328; NM_071834; WBGene00004947; WP:CE36328 WormBase description: The sos-1 gene, also known as let-341, encodes an ortholog of Son of sevenless, a guanine nucleotide exchange factor that affects viability, sex myoblast migration, vulval induction, and oogenesis; it acts genetically downstream of let-23 and upstream of let-60 with respect to vulval development.
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

W03F11.2 W03F11.2 P W All gene names: gcy-17; gcy-24; W03F11.2; 1C790; CE32226; NM_058542; WBGene00001542; WP:CE32226 WormBase description: gcy-17 encodes a predicted guanylate cyclase.
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

W09C3.1 W09C3.1 P W All gene names: W09C3.1; 1F287; CE39114; WBGene00021109; WP:CE39114 WormBase description: serine/threonine protein kinase
                                              
Member of lists (Publications lists):
                                              Reinke et al 2004, mixed sperm soma,                              
                                              Reinke et al 2004, GO categories, Reinke et al 2004,                               
                                              fem3 enriched genes, Romagnolo et al 2002  Fig3b                                   
                                              signaling                                                                          

Y102A5C.22 Y102A5C.22 P W All gene names: srx-54; Y102A5C.22; 5R455; CE36333; NM_074892; WBGene00005945; WP:CE36333 WormBase description: 7TM receptor, srx family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y32B12B.3 Y32B12B.3 P W All gene names: srbc-65; Y32B12B.3; 5R31; CE19064; NM_074788; WBGene00012523; WP:CE19064 WormBase description: 7TM receptor, srbc family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y48B6A.7 Y48B6A.15 P W All gene names: ace-4; Y48B6A.7; Y48B6A.H; Y48B6A.I; 2O495; CE26734; NM_064561; WBGene00000038; WP:CE26734 WormBase description: ace-4 encodes an divergent acetylcholinesterase homolog with biochemically undetectable activity. WormBase CDS description: acetylcholinesterase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

Y4C6A.2 Y4C6A.H P W All gene names: Y4C6A.2; 4G215; CE31736; CE31737; WBGene00021152; WP:CE31736; WP:CE31737 WormBase description: glutamate receptor
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

Y57A10B.4 Y57A10B.4 P W All gene names: sre-42; Y57A10B.4; 2M676; CE37942; NM_064226; WBGene00013276; WP:CE37942 WormBase description: 7TM receptor, sre family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

Y9C9A.4 Y9C9A_54.F P W All gene names: str-169; Y9C9A.4; 4F707; CE25654; CE38255; WBGene00006213; WP:CE25654; WP:CE38255 WormBase description: 7TM chemoreceptor, str family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

ZC204.15 ZC204.15 P W All gene names: srw-97; ZC204.15; 2B958; CE15112; NM_061633; WBGene00005844; WP:CE15112 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

ZC412.2 ZC412.2 P W All gene names: gcy-14; ZC412.2; 5P338; CE15213; NM_074259; WBGene00001540; WP:CE15213 WormBase description: gcy-14 encodes a predicted transmembrane guanylyl cyclase; the precise role of GCY-14 in C. elegans development and/or behavior is not yet known; however, by sequence similarity GCY-14 can be predicted to function in chemosensory signal transduction. WormBase CDS description: guanylate cyclase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

ZC482.6 ZC482.6 P W All gene names: srw-10; ZC482.6; 3N841; CE33901; NM_067257; WBGene00005757; WP:CE33901 WormBase description: 7TM chemoreceptor, srw family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated,                                     
                                              ViswanathanM et al 2005  S2 daf-16 Resveratrol                                     

ZC506.4 ZC506.4 P W All gene names: mgl-1; ZC506.4; CE01682; NM_077273; WBGene00003232; WP:CE01682; XK586 WormBase description: mgl-1 encodes a Group II metabotropic glutamate receptor (OMIM:604099, loss-of-function mutations in mice are associated with defects in long-term depression); by homology, MGL-1 is predicted to function as a pre-synaptic G protein-coupled receptor that, in response to glutamate binding, inhibits adenylyl cyclase activity; loss of mgl-1 activity via large-scale RNAi screens indicates that, in C. elegans, MGL-1 is required for normal post-embryonic growth rates; an mgl-1::GFP reporter is expressed in interneurons, motor neurons, and pharyngeal neurons. WormBase CDS description: metatrophic glutamate receptor
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig1-4                                     
                                              conserved w/ Drosoph, Romagnolo et al 2002  Fig3b                                  
                                              signaling, ViswanathanM et al 2005  S2 daf-16                                      
                                              Resveratrol, Wang et al 2003  S3  genes pass one-way                               
                                              ANOVA, Wang et al 2003  S4 Dauer Enriched, Wang et al                              
                                              2003  S4 genes pass two-wayANOVA P0                                                

ZC84.1 ZC84.1 P W All gene names: ZC84.1; 3K290; CE15020; WBGene00013846; WP:CE15020 WormBase description: Serine protease inhibitor, Kunitz type
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling                             

ZK287.4 ZK287.4 P W All gene names: ZK287.4; 5K158; CE06613; WBGene00013965; WP:CE06613 WormBase description: serine protease inhibitor
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated, Wang et                             
                                              al 2003  S3  genes pass one-way ANOVA, Wang et al 2003                             
                                              S4 LateList, Wang et al 2003  S4 genes pass                                        
                                              two-wayANOVA P0                                                                    

ZK455.2 ZK455.2 P W All gene names: gcy-9; ZK455.2; CE03813; NM_077496; WBGene00001536; WP:CE03813; XL950 WormBase description: guanylate cyclase
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              ViswanathanM et al 2005  S2 sir-2.1 regulated                                      

ZK792.6 ZK792.6 P W All gene names: let-60; lin-34; ZK792.6; 4M454; CE03827; NM_069812; WBGene00002335; WP:CE03827 WormBase description: The let-60 gene encodes a member of the GTP-binding RAS protooncogene family that affects viability, vulval development, spicule development, germ line meiotic progression, posterior development of the hypodermis, and chemotaxis; it acts genetically downstream of let-23 with respect to vulval development and upstream of the MAPK pathway with respect to chemotaxis, and is expressed in neural, muscle, and hypodermal lineages. WormBase CDS description: LET-60 RAS protein
                                              
Member of lists (Publications lists):
                                              McCarroll et al 2004  SFig5 conserved                             
                                              w/ yeast, McCarroll et al 2004  SFig1-4 conserved w/                               
                                              Drosoph, Romagnolo et al 2002  Fig3b signaling                                     

ZK84.6 ZK84.6 P W All gene names: ins-6; ZK84.6; 2G287; CE15253; NM_062797; WBGene00002089; WP:CE15253 WormBase description: ins-6 encodes predicted type-beta insulin-like molecule that lacks a C peptide domain; expressed throughout development and in some neurons beginning in the two-fold elongated embryo. WormBase CDS description: 7TM chemoreceptor, ins family
                                              
Member of lists (Publications lists):
                                              Romagnolo et al 2002  Fig3b signaling,                            
                                              Wang et al 2003  S3  genes pass one-way ANOVA, Wang et                             
                                              al 2003  S4 Dauer Enriched, Wang et al 2003  S4 genes                              
                                              pass two-wayANOVA P0