Steina et al 2007, Muscle enriched genes, 50 genes
Gene list file name: Stetina2007_supp6
Type of gene identifier: Cosmid name
Description: the 50 top ranked muscle-enriched genes
Organism: Caenorhabditis elegans (nematode)
Gene list type: Experimental

Gene name	Source Gene ID	All gene names	WormBase description	WormBase CDS description	Proteome description	Member of lists ()	Other annotations
B0273.1	B0273.1	B0273.1; 4G259; CE16787; WBGene00015097; WP:CE16787				
B0416.7	B0416.7	B0416.7; CE02437; CE39552; WBGene00015182; WP:CE02437; WP:CE39552; XJ914				
C02C2.5	C02C2.5	C02C2.5; 3I966; CE34519; WBGene00015334; WP:CE34519				
C29F5.1	C29F5.1	C29F5.1; 2G595; CE02508; WBGene00016210; WP:CE02508				
C32E12.4	C32E12.4	C32E12.4; 1F800; CE30496; WBGene00016330; WP:CE30496				
C41C4.2	C41C4.2	sre-2; C41C4.2; 2I392; CE37883; NM_063297; WBGene00005150; WP:CE37883	7TM receptor, sre family			
C44B7.4	C44B7.4	C44B7.4; 2H160; CE34753; WBGene00016626; WP:CE34753				
C50F2.4	C50F2.4	C50F2.4; 1E456; CE08910; WBGene00016838; WP:CE08910				
F08F3.10	F08F3.10	F08F3.10; 5F891; CE32855; WBGene00017266; WP:CE32855				
F19B10.1	F19B10.1	F19B10.1; 2D975; CE09468; O02076_CAEEL; WBGene00017583; WP:CE09468				
F21D9.4	F21D9.4	F21D9.4; 5T723; CE18630; WBGene00009018; WP:CE18630				
F28H1.2	F28H1.2	cpn-3; F28H1.2; 1E557; CE09767; NM_058881; WBGene00000779; WP:CE09767	cpn-3 encodes a calponin homolog, most closely related to its paralog CPN-4 in C. elegans; CPN-3 is more similar to the calponin paralogs transgelin (SM22 alpha) or neuronal protein NP25 than to calponin per se.	calponin		
F29F11.4	F29F11.4	twk-12; F29F11.4; 5L149; CE37366; NM_073330; WBGene00006667; WP:CE37366	twk-12 encodes one of 44 C. elegans TWK (two-P domain K+) potassium channel subunits that contain two pore-forming domains and four transmembrane domains; as loss of TWK-12 function via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of TWK-12 in C. elegans development and/or behavior is not yet known; TWK-12 may, however, function redundantly with other TWK channels; the TWK-12 expression pattern has not been determined.	potassium channel protein like		
F46G10.6	F46G10.6	hlh-23; mxl-3; F46G10.6; CE05882; NM_077822; WBGene00003511; WP:CE05882; XN968	Helix-loop-helix DNA-binding domain			
F53A3.7	F53A3.7	F53A3.7; 3D41; CE23764; WBGene00018723; WP:CE23764				
F55C5.5	F55C5.5	EF-TS; tsfm-1; F55C5.5; 5M750; CE11158; WBGene00010094; WP:CE11158	F55C5.5 encodes a translational elongation factor Ts (EF-Ts) that binds two different EF-Tu proteins (EF-TU1/Y71H2AM.23 and EF-TU2/C43E11.4) in vitro, stimulating guanine-nucleotide exchange and mRNA translation; F55C5.5 is predicted to be mitochondrial and has a putative N-terminal transit peptide sequence; F55C5.5 is required in mass RNAi assays for normally rapid growth and for maintenance of the germline.	mitochondrial elongation factor TS		
H22K11.4	H22K11.4	H22K11.4; CE37119; CE40082; WBGene00019227; WP:CE37119; WP:CE40082; XH406	H22K11.4 is orthologous to the human gene SARCOGLYCAN, ALPHA (50KD DYSTROPHIN-ASSOCIATED GLYCOPROTEIN) (SGCA; OMIM:600119), which when mutated leads to disease.			
K04D7.3	K04D7.3	gta-1; K04D7.3; 4K947; CE06092; NM_069461; WBGene00001794; WP:CE06092	The gta-1 gene encodes an ortholog of the human gene GABAT, which when mutated leads to GABA-transaminase deficiency (OMIM:137150).	4-aminobutyrate aminotransferase		
K08F4.7	K08F4.7	gst-4; K08F4.7; 4K907; CE06155; CeGST1; GST4_CAEEL; NM_069447; WBGene00001752; WP:CE06155	gst-4 encodes a predicted glutathione S-transferase; mRNA is expressed in adults and accumulation increases in response to paraquat.	glutathione S-transferase		
R03E9.2	R03E9.2	R03E9.2; CE04785; WBGene00019843; WP:CE04785; XH350				
R07C3.4	R07C3.4	R07C3.4; 2B221; CE12528; WBGene00019920; WP:CE12528	ATP-dependent AMP-binding protein			
R148.6	R148.6	heh-1; tag-79; R148.6; 3E288; CE31057; NM_065270; WBGene00006452; WP:CE31057	tag-79/R148.6 is orthologous to human NPC2 (OMIM:601015, mutated in Niemann-Pick disease type C2)			
R173.1	R173.1	cah-5; R173.1; CE36560; NM_076785; WBGene00000283; WP:CE36560; XH641	cah-5 encodes a member of the carbonic anhydrase family.	carbonic anhydrase		
T04F8.1	T04F8.1	T04F8.1; CE03614; WBGene00011440; WP:CE03614; XM278				
T07H6.4	T07H6.4	T07H6.4; CE04914; WBGene00020331; WP:CE04914; XG900	sushi repeats			
T13H10.1	T13H10.1	kin-5; T13H10.1; 4K732; CE06444; NM_069392; WBGene00002193; WP:CE06444	kin-5 encodes a predicted protein tyrosine kinase that is most closely related to the non-receptor tyrosine kinases Fes/Fps and Fer that contain an SH2 domain and a tyrosine kinase domain (OMIM:190030, murine Fes appears to be required for hemopoietic homeostasis); as loss of kin-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of kin-5 in C. elegans development and/or behavior is not yet known.	Src homology domain 2, tyrosine-protein kinase (FES/FPS subfamily)		
T19D2.3	T19D2.3	T19D2.3; CE07516; WBGene00020568; WP:CE07516; XE559				
T21B6.3	T21B6.3	T21B6.3; CE31621; Q22631_CAEEL; WBGene00011880; WP:CE31621; XL564	The protein product of this gene is predicted to contain a glutamine/asparagine (Q/N)-rich ('prion') domain, by the algorithm of Michelitsch and Weissman (as of the WS77 release of WormBase, i.e., in wormpep77).	f-spondin like protein		
T22H2.4	T22H2.4	T22H2.4; 1M288; CE14002; WBGene00011934; WP:CE14002				
T28D9.4	T28D9.4	T28D9.4; 2G769; CE36024; CE39787; WBGene00020896; WP:CE36024; WP:CE39787				
Y116F11A.6	Y116F11A.6	Y116F11A.6; 5U197; CE24159; WBGene00013819; WP:CE24159				
Y19D10A.15	Y19D10A.15	srd-75; Y19D10A.15; 5C875; WBGene00044099	7TM chemoreceptor, srd family			
Y19D10A.4	Y19D10A.4	Y19D10A.4; 5C871; WBGene00021219				
Y38F1A.2	Y38F1A.2	Y38F1A.2; 2N247; CE21607; WBGene00012606; WP:CE21607	Zinc finger, C3HC4 type (RING finger)			
Y47D3B.7	Y47D3B.7	hlh-20; lpd-1; sbp-1; Y47D3B.7; 3M518; CE19180; NM_067071; Q9XX00_CAEEL; WBGene00004735; WP:CE19180	sbp-1 encodes a basic helix-loop-helix (bHLH) transcription factor homologous to the mammalian Sterol Regulatory Element Binding Proteins (SREBPs, OMIM:184756, overexpression of nuclear form of SREBP-1c is associated with insulin resistance and features of congenital generalized lipodystrophy); in C. elegans, SBP-1 activity is required for normal lipid metabolism and wild-type levels of lipogenic enzyme expression, as well as for embryonic and larval development; sbp-1 expression is detected exclusively in the intestine, the major site of fat storage, from early embryogenesis through adulthood.	Helix-loop-helix DNA-binding domain		
Y51A2D.14	Y51A2D.14	Y51A2D.14; 5T63; CE19210; WBGene00013081; WP:CE19210				
Y54G2A.29	Y54G2A.29	Y54G2A.29; Y54G2A.B; 4D788; CE34416; WBGene00021893; WP:CE34416				
Y71H2AM.15	Y71H2AM.15	Y71H2AM.15; 3D838; CE27319; CE39069; Q9BL41_CAEEL; WBGene00022180; WP:CE27319; WP:CE39069				
Y73F8A.26	Y73F8A.26	Y73F8A.26; 4Q241; CE25594; WBGene00013531; WP:CE25594				
Y75B7AR.1	Y75B7AR.1	Y75B7AR.1; 5B870; CE27416; WBGene00022287; WP:CE27416				
ZC374.2	ZC374.2	ZC374.2; CE03804; WBGene00013872; WP:CE03804; XK654	Fibronectin type III domain (4 domains)			
ZK643.1	ZK643.1	ZK643.1; 3K25; CE00440; WBGene00014033; WP:CE00440