Wiener et al 2005, Gene expression between 10-day , 139 genes

Gene list file name:HWiener2005_tables3
Type of gene identifier:Cosmid name
Description:Comparison of gene expression between 10-day old daf-2 and 6-day old control worms broken daown by gene family and fold increase or decrease  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

F13D12.4 alh-8 P W
B0280.5 B0280.5 P W All gene names: cpg-2; B0280.5; 3I192; B028_CAEEL; CE31868; WBGene00015102; WP:CE31868 WormBase description: B0280.5 encodes a protein with a chitin binding peritrophin-A domain that is required, in conjunction with CEJ-1, for early embryonic development; B0280.5 mRNA is expressed specifically in the adult hermaphrodite germ line, is a direct target of GLD-1, and has an RNAi phenotype consistent with the hypothesis that B0280.5 is an effector of GLD-1 in the germline.
B0334.1 B0334.1 P W All gene names: B0334.1; 2L776; CE02932; WBGene00007142; WP:CE02932 WormBase description: Transthyretin-like family
R06C7.8 bub-1 P W
C09H10.6 C09H10.6 P W All gene names: nasp-1; C09H10.6; 2L397; CE03007; Q17886_CAEEL; WBGene00007500; WP:CE03007 WormBase description: histone binding protein
C15C7.5 C15C7.5 P W All gene names: C15C7.5; CE03991; WBGene00015791; WP:CE03991; XD770
C33H5.13 C33H5.13 P W All gene names: C33H5.13; 4I556; CE04156; WBGene00016379; WP:CE04156
C34D1.5 C34D1.5 P W All gene names: zip-5; C34D1.5; 5N749; CE18541; WBGene00007932; WP:CE18541 WormBase description: Basic region plus leucine zipper transcription factors
C38D4.3 C38D4.3 P W All gene names: mel-28; C38D4.3; 3F881; CE36378; WBGene00003210; WBGene00008004; WP:CE36378 WormBase description: mel-28 was identified in a screen for genes involved in cell division in the early embryo; mel-28 mutants have no or poorly visible pronuclei and a weak mititic spindle; the molecular identity of mel-28 is unknown.
C44B7.10 C44B7.10 P W All gene names: C44B7.10; 2H180; CE32326; WBGene00016630; WP:CE32326
C54G10.3 C54G10.3 P W All gene names: pmp-3; C54G10.3; 5P133; CE05518; NM_074219; WBGene00004060; WP:CE05518 WormBase description: peroxisomal membrane protein (PMP70)
C56C10.8 C56C10.8 P W All gene names: icd-1; C56C10.8; 2G878; BTF3_CAEEL; CE02573; NM_062935; WBGene00002045; WP:CE02573 WormBase description: Transcription factor BTF3 (human)
T05G5.3 cdk-1 P W
C07G2.1 cej-1 P W
F33A8.3 cey-1 P W
F46F11.2 cey-2 P W
Y39A1C.3 cey-4 P W
C53B4.5 col-119 P W
T05A1.2 col-122 P W
C24F3.6 col-124 P W
F26F12.1 col-140 P W
T15B7.5 col-141 P W
T15B7.3 col-143 P W
F57B1.3 col-159 P W
F57B1.4 col-160 P W
C34F6.2 col-178 P W
C34F6.3 col-179 P W
F02D10.1 col-183 P W
F15A2.1 col-184 P W
ZK1193.1 col-19 P W
T05E7.2 col-55 P W
F11H8.3 col-8 P W
K12D12.3 col-84 P W
Y41C4A.16 col-95 P W
F56A8.6 cpf-2 P W
ZK856.1 cul-5 P W
ZC168.4 cyb-1 P W
T06E6.2 cyb-3 P W
M03A8.1 dhs-28 P W
ZK863.6 dpy-30 P W
C04A2.3 egl-27 P W
F10G7.2 F10G7.2 P W All gene names: tsn-1; F10G7.2; 2E999; CE02626; NM_062438; WBGene00006626; WP:CE02626 WormBase description: human 100 kDa activator protein
F12F6.5 F12F6.5 P W All gene names: tag-13; F12F6.5; 4M341; CE20680; Q19370_CAEEL; WBGene00006406; WP:CE20680 WormBase description: chimaerin like
F13H8.7 F13H8.7 P W All gene names: F13H8.7; 2G578; CE02641; WBGene00017440; WP:CE02641 WormBase description: beta-ureidopropionase (rat)
F18A1.5 F18A1.5, rpa-1 P W All gene names: rpa-1; F18A1.5; 2H955; CE04405; RFA1_CAEEL; WBGene00017546; WP:CE04405 WormBase description: F18A1.5 encodes the C. elegans ortholog of the replication protein A (RPA) large subunit; by homology, the F18A1.5 gene product is predicted to function as a DNA binding and oligonucleotide oligosaccharide binding (OB) protein that is required for DNA replication, repair, and recombination; large-scale RNAi screens indicate that the product of F18A1.5 is essential for embryonic development, and that in yeast two-hybrid assays interacts with the product of M04F3.1, the RPA medium subunit; in situ hybridization studies indicate that F18A1.5 transcripts are expressed in germ cells. WormBase CDS description: replication factor A
F23A7.4 F23A7.4 P W All gene names: F23A7.4; CE09578; WBGene00009069; WP:CE09578; XQ825 WormBase description: glutamate receptor epsilon subunit like
F30F8.3 F30F8.3 P W All gene names: F30F8.3; 1I413; CE27147; Q93654_CAEEL; WBGene00009272; WP:CE27147 WormBase description: PDZ domain (Also known as DHR or GLGF).
F32E10.6 F32E10.6 P W All gene names: F32E10.6; 4I344; CE04479; WBGene00017993; WP:CE04479
F42A9.1 F42A9.1 P W All gene names: tag-137; F42A9.1; 4J407; CE10292; CE10294; WBGene00006483; WBGene00018331; WP:CE10292; WP:CE10294 WormBase description: kinase
F44G4.4 F44G4.4 P W All gene names: tag-169; F44G4.4; 2J289; CE02231; CE36440; Q20414_CAEEL; WBGene00006514; WP:CE02231; WP:CE36440 WormBase description: RNA binding protein
F55A3.3 F55A3.3 P W All gene names: phi-16; F55A3.3; 1L369; CE17113; WBGene00018849; WP:CE17113 WormBase description: transcritpion factor
F59B2.13 F59B2.13 P W All gene names: SRQ-1; F59B2.13; 3K110; CE37246; WBGene00010315; WP:CE37246 WormBase description: possible G protein coupled receptor
Y67H2A.8 fat-1 P W
W02A2.1 fat-2 P W
W08D2.4 fat-3 P W
VZK822L.1 fat-6 P W
K08C7.5 fmo-12 P W
Y57G11C.10 gdi-1 P W
C05E4.9 gei-7 P W
H02I12.1 H02I12.1 P W All gene names: H02I12.1; 4M141; CE37527; O45599_CAEEL; WBGene00010351; WP:CE37527
F43E2.4 haf-2 P W
C53A5.3 hda-1 P W
C26D10.2 hel-1 P W
F55G1.3 his-62 P W
Y49E10.6 His-72 P W
Y48B6A.14 hmg-1.1 P W
Y17G7A.1 hmg-12 P W
F42A6.7 hrp-1 P W
F38E11.1 hsp-12.3 P W
F38E11.2 hsp-12.6 P W
T27E4.8 hsp-16.1 P W
T27E4.2 hsp-16.11 P W
Y46H3A.3 hsp-16.2 P W
Y46H3A.2 hsp-16.41 P W
T27E4.3 hsp-16.48 P W
K04F10.6 K04F10.6 P W All gene names: mut-2; rde-3; K04F10.6; CE11740; CE33137; WBGene00003499; WBGene00019398; WP:CE11740; WP:CE33137 WormBase description: mut-2 encodes a nucleotidyltransferase that is a member of the polymerase beta nucleotidyltransferase superfamily that includes poly(A) polymerases, 2-5 oligoadenylate synthetases, C. elegans GLD-2, and S. cerevisiae Trf4p; MUT-2 activity is required for meiotic chromosome segregation, negative regulation of DNA transposition, non-transgene-induced RNAi (i.e. RNAi via feeding is affected, whereas RNAi via expression of sense and antisense RNA from a transgene is not), fertility, and viability; analysis of siRNA levels in mut-2 mutant animals indicates that during RNAi, MUT-2 activity is required at a point upstream of siRNA accumulation; neither the precise mechanistic role of MUT-2 in posttranscriptional silencing, nor the MUT-2 expression pattern, is yet known.
K07A1.6 K07A1.6 P W All gene names: K07A1.6; 1K168; CE18856; WBGene00010613; WP:CE18856
K07C5.4 K07C5.4 P W All gene names: K07C5.4; 5K832; CE06114; WBGene00010627; WP:CE06114 WormBase description: yeast protein L8167.9-like
K12G11.3 K12G11.3 P W All gene names: dod-11; sodh-1; K12G11.3; 5M369; ADH1_CAEEL; CE12212; NM_073590; WBGene00010790; WP:CE12212 WormBase description: alcohol dehydrogenase
T01G9.6 kin-10 P W
C33H5.4 klp-10 P W
DY3.2 lmn-1 P W
M04C9.6 M04C9.6 P W All gene names: M04C9.6; WBGene00010861
M28.5 M28.5 P W All gene names: phi-9; M28.5; 2K948; CE02283; SNU13CE; WBGene00010896; WP:CE02283 WormBase description: ribosomal protein (L7AE family)
Y17G7B.5 mcm-2 P W
C25D7.6 mcm-3 P W
Y39G10AR.14 mcm-4 P W
R10E4.4 mcm-5 P W
ZK632.1 mcm-6 P W
AH6.5 mex-6 P W
W03D2.4 pcn-1 P W
Y48G1BL.3 puf-10 P W
F54C9.8 puf-5 P W
F18A11.1 puf-6 P W
B0273.2 puf-7 P W
R151.2 R151.2 P W All gene names: R151.2; 3I303; CE00745; CE29454; CE29987; CE37138; Q21994_CAEEL; WBGene00020107; WP:CE00745; WP:CE29454; WP:CE29987; WP:CE37138 WormBase description: R151.2 is orthologous to the human gene PHOSPHORIBOSYL PYROPHOSPHATE SYNTHETASE 1 (PRPS1; OMIM:311850), which when mutated leads to disease
F53G12.1 rab-11.1 P W
C26D10.1 ran-3 P W
C27B7.8 rap-1 P W
K01G5.6 rib-2 P W
K02F3.11 rnp-5 P W
F18A1.5 F18A1.5, rpa-1 P W All gene names: rpa-1; F18A1.5; 2H955; CE04405; RFA1_CAEEL; WBGene00017546; WP:CE04405 WormBase description: F18A1.5 encodes the C. elegans ortholog of the replication protein A (RPA) large subunit; by homology, the F18A1.5 gene product is predicted to function as a DNA binding and oligonucleotide oligosaccharide binding (OB) protein that is required for DNA replication, repair, and recombination; large-scale RNAi screens indicate that the product of F18A1.5 is essential for embryonic development, and that in yeast two-hybrid assays interacts with the product of M04F3.1, the RPA medium subunit; in situ hybridization studies indicate that F18A1.5 transcripts are expressed in germ cells. WormBase CDS description: replication factor A
F10B5.1 rpl-10 P W
C04F12.4 rpl-14 P W
C09D4.5 rpl-19 P W
B0250.1 rpl-2 P W
E04A4.8 rpl-20 P W
B0336.10 rpl-23 P W
B0513.3 rpl-29 P W
Y106G6H.3 rpl-30 P W
W09C5.6 rpl-31 P W
B0041.4 rpl-4 P W
Y48B6A.2 rpl-43 P W
B0393.1 rps-0 P W
F40F11.1 rps-11 P W
C16A3.9 rps-13 P W
T08B2.10 rps-17 P W
C49H3.11 rps-2 P W
F53A3.3 rps-22 P W
F56E10.4 rps-27 P W
ZC434.2 rps-7 P W
F42C5.8 rps-8 P W
C18D11.4 rsp-8 P W
T19E7.2 skn-1 P W
ZC404.8 spn-4 P W
C27B7.1 spr-2 P W
T10F2.4 T10F2.4 P W All gene names: T10F2.4; 3G260; CE38104; WBGene00020423; WP:CE38104
T28B4.3 T28B4.3 P W All gene names: T28B4.3; CE14325; WBGene00020886; WP:CE14325; XH214
F09E10.11 tts-1 P W
Y105E8A.16 Y105E8A.16 P W All gene names: rps-20; Y105E8A.16; Y105E8B.S; 1P60; CE29835; NM_170948; WBGene00004489; WP:CE29835 WormBase description: rps-20 encodes a small ribosomal subunit S20 protein.
Y24D9A.4 Y24D9A.4 P W All gene names: phi-22; rpl-7A; rpl-8; Y24D9A.4; 4F154; CE27398; CE30401; NM_171316; NM_171904; WBGene00004419; WP:CE27398; WP:CE30401 WormBase description: rpl-8 encodes a large ribosomal subunit L7a protein required in mass RNAi assays for fertility, vulval development, and general health; the rpl-8 transcription unit has one nonsense transcript that is up-regulated in vivo by smg[-] mutations, indicating that rpl-8 is a natural substrate for SMG-mediated nonsense suppresssion; several other natural mRNA substrates of SMG suppression (e.g., rpl-3, rpl-10, rpl-12) have protein products that are involved in translation.
Y40B10A.6 Y40B10A.6 P W All gene names: Y40B10A.6; 5C522; CE21794; WBGene00021491; WP:CE21794
Y41D4B.5 Y41D4B.5 P W All gene names: rps-28; Y41D4B.5; 4C425; CE21842; NM_067714; WBGene00004497; WP:CE21842 WormBase description: rps-28 encodes a small ribosomal subunit S28 protein.
Y48G8AL.8 Y48G8AL.8 P W All gene names: rpl-17; Y48G8AL.8; Y48G8A_3945.C; 1B631; CE22195; CE30023; NM_170799; NM_171832; WBGene00004429; WP:CE22195; WP:CE30023 WormBase description: rpl-17 encodes a large ribosomal subunit L17 protein; by homology, RPL-17 is predicted to function in protein biosynthesis; in C. elegans, RPL-17 activity is required for embryonic and germline development, as well as normal postembryonic growth rates.
Y73B6BL.6 Y73B6BL.6 P W All gene names: sqd-1; Y73B6BL.6; 4H89; CE29008; CE38662; NM_068562; WBGene00022235; WP:CE29008; WP:CE38662
ZK1128.8 ZK1128.8 P W All gene names: vps-29; ZK1128.8; 3L202; CE34140; CE34141; WBGene00014234; WP:CE34140; WP:CE34141
ZK20.3 ZK20.3 P W All gene names: ZK20.3; 2L942; CE06606; WBGene00013924; WP:CE06606 WormBase description: RAD23 protein homolog2 like
ZK484.1 ZK484.1 P W All gene names: ZK484.1; 1G671; CE15337; WBGene00022748; WP:CE15337
ZK863.4 ZK863.4 P W All gene names: ZK863.4; 5M662; CE23469; WBGene00014124; WP:CE23469