Stetina et al 2007, Hormone receptors, 37 genes

Gene list file name:Stetina2007_table3HR
Type of gene identifier:Cosmid name
Description:Major transcription factor families enriched in C. elegans neurons Hormone receptor group  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

C06C6.4 C06C6.4 P W All gene names: nhr-63; C06C6.4; 5Q483; CE28202; NM_171557; WBGene00003653; WP:CE28202 WormBase description: Zinc finger, C4 type (two domains)
C08F8.8 C08F8.8 P W All gene names: nhr-67; C08F8.8; 4L939; CE18491; NHR67_CAEEL; NM_069693; WBGene00003657; WP:CE18491 WormBase description: nuclear hormone receptor
C17E7.8 C17E7.8 P W All gene names: nhr-124; C17E7.8; 5E354; CE30728; NM_071669; WBGene00003714; WP:CE30728 WormBase description: nuclear hormone receptor
C24G6.4 C24G6.4 P W All gene names: Csr-1; nhr-279; nhr-47; C24G6.4; 5F989; CE27727; NM_072054; WBGene00003637; WP:CE27727 WormBase description: nhr-47 is predicted to encode a nuclear hormone receptor (NHR); gene expression of nhr-47 appears to be induced upon exposure of worm cultures to estradiol. WormBase CDS description: zinc finger protein
C49F5.4 C49F5.4 P W All gene names: nhr-167; C49F5.4; CE08855; WBGene00008208; WP:CE08855; XM600 WormBase description: Ligand-binding domain of nuclear hormone receptors, Zinc finger, C4 type (two domains)
F07C3.10 F07C3.10 P W All gene names: nhr-36; F07C3.10; 5J738; CE07031; WBGene00017198; WP:CE07031 WormBase description: zinc finger protein
F09C6.9 F09C6.9 P W All gene names: nhr-116; F09C6.9; 5R395; CE37501; NM_074872; WBGene00003706; WP:CE37501 WormBase description: nuclear hormone receptor
F16B4.9 F16B4.9 P W All gene names: nhr-178; F16B4.9; 5C82; CE17680; WBGene00017510; WP:CE17680 WormBase description: nuclear hormone receptor
F21D12.1 F21D12.1 P W All gene names: nhr-21; nhr-21a; nhr-21b; F21D12.1; 2H637; CE20706; CE27988; CE33375; CE33377; CE39353; WBGene00003620; WP:CE20706; WP:CE27988; WP:CE33375; WP:CE33377; WP:CE39353 WormBase description: modulating N-terminal of steroid/thyroid/retinoic nuclear hormone receptors
F31F4.12 F31F4.12 P W All gene names: nhr-180; F31F4.12; 5B144; CE17736; WBGene00017961; WP:CE17736 WormBase description: zinc finger protein
F41B5.9 F41B5.9 P W All gene names: nhr-182; F41B5.9; 5C734; CE10232; WBGene00018265; WP:CE10232 WormBase description: nuclear hormone receptor
F44C8.11 F44C8.11 P W All gene names: nhr-96; F44C8.11; 5C713; CE35309; NM_071210; WBGene00003686; WP:CE35309 WormBase description: nhr-96 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. WormBase CDS description: nuclear hormone receptor
F44C8.9 F44C8.9 P W All gene names: nhr-184; F44C8.9; 5C692; CE35310; CE35311; WBGene00018415; WP:CE35310; WP:CE35311 WormBase description: zinc finger protein
F47C10.3 F47C10.3 P W All gene names: nhr-186; F47C10.3; 5E328; CE17835; WBGene00018541; WP:CE17835 WormBase description: nuclear hormone receptor
F47C10.7 F47C10.7 P W All gene names: nhr-188; F47C10.7; 5E332; CE10666; WBGene00018544; WP:CE10666
F48G7.11 F48G7.11 P W All gene names: nhr-190; F48G7.11; 5B120; CE35318; WBGene00018622; WP:CE35318 WormBase description: nuclear hormone receptor
F56E3.4 F56E3.4 P W All gene names: fax-1; nhr-29; F56E3.4; CE28464; NM_076146; WBGene00001400; WP:CE28464; XD816 WormBase description: fax-1 encodes a predicted nuclear hormone receptor that contains two C4-type zinc fingers; FAX-1 is orthologous to the vertebrate photoreceptor-specific nuclear receptor (NR2E3 or PNR; OMIM:604485, mutated in enhanced S-cone syndrome and retinitis pigmentosa); FAX-1 is required for normal locomotion and for specification of neuronal identities, including pathfinding of the AVKR, AVKL, HSNL, and PVQL axons and expresion of the FMRFamide-like FLP-1 peptide neurotransmitter in AVKR and AVKL; FAX-1 is expressed in embryonic neurons, including the AVK interneurons, just prior to axon extension. WormBase CDS description: nuclear hormone receptor
F59E11.8 F59E11.8 P W All gene names: nhr-194; F59E11.8; 5J446; CE35890; WBGene00019114; WP:CE35890 WormBase description: zinc finger protein
H01A20.1 H01A20.1 P W All gene names: nhr-3; H01A20.1; CE18798; NM_078022; WBGene00003602; WP:CE18798; XP179 WormBase description: nhr-3 encodes a member of the superfamily of nuclear receptors which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain; nhr-3 has been identified and characterised as a gene affected by ethanol exposure in a microarray analysis of all C. elegans ORFs. WormBase CDS description: Zinc finger, C4 type (two domains)
K06B4.1 K06B4.1 P W All gene names: nhr-51; K06B4.1; 5Q159; CE35582; NHR51_CAEEL; NM_074497; WBGene00003641; WP:CE35582 WormBase description: Zinc finger, C4 type (two domains)
K06B4.10 K06B4.10 P W All gene names: nhr-199; K06B4.10; 5Q176; CE11800; WBGene00010604; WP:CE11800 WormBase description: Zinc finger, C4 type (two domains) (2 domains)
K06B4.2 K06B4.2 P W All gene names: nhr-52; K06B4.2; CE11784; NM_074498; WBGene00003642; WP:CE11784 WormBase description: Zinc finger, C4 type (two domains)
K06B4.8 K06B4.8 P W All gene names: nhr-198; K06B4.8; 5Q173; CE35584; WBGene00010603; WP:CE35584 WormBase description: Zinc finger, C4 type (two domains)
K08A2.5 K08A2.5 P W All gene names: nhr-88; K08A2.5; K08A2.D; 2D275; CE29513; CE33143; CE33144; WBGene00003678; WP:CE29513; WP:CE33143; WP:CE33144 WormBase description: transposase
K11E4.5 K11E4.5 P W All gene names: nhr-71; K11E4.5; CE28244; CE37391; NHR71_CAEEL; NM_171792; WBGene00003661; WP:CE28244; WP:CE37391; XO369 WormBase description: Zinc finger, C4 type (two domains)
R07B7.15 R07B7.15 P W All gene names: nhr-208; R07B7.15; 5M575; CE35597; WBGene00011099; WP:CE35597 WormBase description: Zinc finger, C4 type (two domains)
R09G11.2 R09G11.2 P W All gene names: crf-1; nhr-1; R09G11.2; CE33812; CE34353; CE34355; WBGene00003600; WP:CE33812; WP:CE34353; WP:CE34355; XS139 WormBase description: nhr-1 encodes a member of the nuclear receptor superfamily; phylogenetic analyses indicate that NHR-1 is a divergent nuclear receptor that likely arose from expansion and diversification of the HNF4 (NR2A) subgroup in C. elegans; nhr-1 reporter gene expression is detected in hypodermal cells from the 3-fold stage of embryogenesis until adulthood, but as loss of nhr-1 activity via mutation or large-scale RNAi screens does not result in any obvious abnormalities, the precise role of NHR-1 in C. elegans development and/or behavior is not yet known.
R11E3.5 R11E3.5 P W All gene names: nhr-104; R11E3.5; 4F550; CE31719; CE31720; CE37269; NM_171326; NM_171327; WBGene00003694; WP:CE31719; WP:CE31720; WP:CE37269 WormBase description: nhr-104 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain.
T03G6.2 T03G6.2 P W All gene names: nhr-40; T03G6.2; CE31227; CE31228; CE31982; NM_171636; WBGene00003630; WP:CE31227; WP:CE31228; WP:CE31982; XD225 WormBase description: steroid/thyroid/retinoic nuclear hormone receptor family
T07C5.4 T07C5.4 P W All gene names: nhr-215; T07C5.4; CE06382; WBGene00011567; WP:CE06382; XN316
T19A5.4 T19A5.4 P W All gene names: nhr-44; T19A5.4; 5J442; CE13732; NM_072912; WBGene00003634; WP:CE13732 WormBase description: zinc finger protein
T27B7.1 T27B7.1 P W All gene names: nhr-59; T27B7.1; 5C756; CE30194; NM_071223; WBGene00003649; WP:CE30194
T27B7.4 T27B7.4 P W All gene names: nhr-115; T27B7.4; 5C771; CE35785; NM_071228; WBGene00003705; WP:CE35785 WormBase description: zinc finger protein
Y17D7A.3 Y17D7A.3 P W All gene names: nhr-65; Y17D7A.3; 5T325; CE16588; CE35061; WBGene00003655; WP:CE16588; WP:CE35061 WormBase description: nhr-65 encodes a protein with similarity to members of the nuclear hormone receptor superfamily; although nhr-65 is not predicted to encode a complete DNA-binding domain, it is expressed, based on mRNA analysis cgc3416.
Y39B6A.17 Y39B6A.17 P W All gene names: nhr-95; Y39B6A.17; 5T552; CE31105; CE34507; NM_171590; WBGene00003685; WP:CE31105; WP:CE34507 WormBase description: nhr-95 encodes a member of the superfamily of nuclear receptors, which is one of the most abundant class of transcriptional regulators; nuclear receptors have a well conserved DNA binding domain and a less conserved C-terminal ligand binding domain. WormBase CDS description: nuclear hormome receptor
Y67D8B.2 Y67D8B.2 P W All gene names: Y67D8B.2; 4D944; CE25544; WBGene00022062; WP:CE25544
Y94H6A.1 Y94H6A.1 P W All gene names: nhr-277; Y94H6A.1; 4D511; CE34619; WBGene00022374; WP:CE34619