Robertson et al 2005, Fig4 skin-1 dependent genes, 50 genes

Gene list file name:Robertson2005_Fig4_skin-1_dependent_genes
Type of gene identifier:MA primer pair (sjj)
Description:Robertson et al 2005 Fig 4: 50 genes that are zygotically expressed (up-regulated in 12-cell embryos versus 4-cell embryos) and whose expression is down-regulated in skn-1 samples (12-cell embryos versus 4-cell embryos) at least threefold in all three arrays.  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0303.8 B0303.8 P W All gene names: sdz-1; B0303.8; 3J788; CE00001; SDZ1_CAEEL; WBGene00015129; WP:CE00001
C08A9.7 C08A9.7 P W All gene names: sdz-2; C08A9.7; CE06789; WBGene00015587; WP:CE06789; XR714
C29F5.2 C29F5.2 P W All gene names: sdz-3; C29F5.2; 2G589; CE36105; WBGene00016211; WP:CE36105
C32B5.16 C32B5.16 P W All gene names: sdz-4; C32B5.16; 2B251; CE08524; WBGene00016309; WP:CE08524
C41H7.8 C41H7.2 P W
C43D7.5 C43D7.5 P W All gene names: sdz-6; C43D7.5; 5T793; CE18549; WBGene00008068; WP:CE18549
C49D10.10 C49D10.10 P W All gene names: C49D10.10; 2E164; CE29229; WBGene00016778; WP:CE29229 WormBase description: C49D10.10 encodes a neprilysin; neprilysins are thermolysin-like zinc metallopeptidases, found on the outer surface of animal cells, that negatively regulate small signalling peptides (e.g., enkephalin, tachykinin, insulin, and natriuretic peptides) by cleaving them; C49D10.10 has no clear orthologs in other organisms. WormBase CDS description: protease
C55A6.5 C55A6.5 P W All gene names: sdz-8; C55A6.5; 5L996; CE09002; WBGene00008334; WP:CE09002 WormBase description: alcohol dehydrogenase
DC2.7 DC2.7 P W All gene names: kin-33; DC2.7; 5A708; CE27899; CE37624; CE38311; WBGene00017083; WP:CE27899; WP:CE37624; WP:CE38311 WormBase description: protein kinase
F08D12.10 F08D12.10 P W All gene names: fbxb-110; sdz-9; F08D12.10; 2D62; CE09243; WBGene00017253; WP:CE09243 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
F08D12.9 F08D12.9 P W All gene names: fbxb-109; sdz-10; F08D12.9; 2D60; CE09242; WBGene00017252; WP:CE09242 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; its encoded protein also contains a Pfam-B45 motif of presently unknown function.
F12E12.9 F12E12.B P W
F12E12.5 F12E12.E P W
F13E9.6 F13E9.6 P W All gene names: sdz-13; F13E9.6; 4L642; CE05608; WBGene00008755; WP:CE05608
F14B6.1 F14B6.1 P W All gene names: sdz-14; F14B6.1; 1M808; CE17663; WBGene00008782; WP:CE17663
F23F12.4 F23F12.4 P W All gene names: sdz-15; F23F12.4; 3H587; CE01251; SDZ15_CAEEL; WBGene00017752; WP:CE01251 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F31E9.4 F31E9.4 P W All gene names: sdz-16; F31E9.4; 5R806; CE15938; WBGene00009297; WP:CE15938 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
F40F12.1 F40F12.1 P W All gene names: sdz-17; F40F12.1; 3L6; CE00616; WBGene00009590; WP:CE00616 WormBase description: Transthyretin-like family
F40H6.4 F40H6.4 P W All gene names: CE-TBX-11; tbx-11; F40H6.4; 3H134; CE01281; NM_065916; TBX11_CAEEL; WBGene00006547; WP:CE01281 WormBase description: tbx-11 encodes a T-box transcription factor that is orthologous to members of the Tbx2 subfamily of T-box transcription factors; by homology, TBX-11 is predicted to function in transcriptional regulation during cellular differentiation, potentially as both an activator and a repressor; however, as loss of tbx-11 function via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of tbx-11 in C. elegans development and/or behavior is not yet known.
F44F1.7 F44F1.7 P W All gene names: vet-6; F44F1.7; 1N863; CE10424; NM_060931; O02264_CAEEL; WBGene00006902; WBGene00009699; WP:CE10424 WormBase description: vet-6 encodes a protein that contains a spectrin repeat; vet-6 is preferentially transcribed in embryos prior to gastrulation.
F45C12.11 F45C12.11 P W All gene names: bath-32; sdz-18; F45C12.11; 2B994; CE10456; O16736_CAEEL; WBGene00018442; WP:CE10456
F45E6.6 F45E6.6 P W All gene names: sdz-19; F45E6.6; CE17830; WBGene00009728; WP:CE17830; XN122
F52B11.6 F52B11.6 P W All gene names: ins-34; F52B11.6; 4O871; CE39736; NM_070301; WBGene00002117; WP:CE39736 WormBase description: ins-34 encodes an insulin-like peptide.
F53A2.2 F53A2.2 P W All gene names: sdz-20; F53A2.2; 3O425; CE16094; WBGene00009950; WP:CE16094
F54E7.5 F54E7.5 P W All gene names: sdz-21; F54E7.5; 3G744; CE01316; WBGene00018828; WP:CE01316
F56F4.1 F56F4.1 P W All gene names: sdz-22; F56F4.1; 1G727; CE39020; WBGene00018978; WP:CE39020
F58E10.1 F58E10.1 P W All gene names: F58E10.1; 5O468; CE30677; WBGene00010259; WP:CE30677
F58E10.5 F58E10.5 P W All gene names: end-3; F58E10.5; 5O495; CE18787; NM_074079; WBGene00001311; WP:CE18787 WormBase description: end-3 encodes a GATA zinc finger protein, paralogous to end-1, that helps specify mesoendodermal (as opposed to mesectodermal) lineages derived from the E blastomere. WormBase CDS description: GATA family of transcription factors
F58G4.4 F58G4.4 P W All gene names: sdz-23; F58G4.4; 5I575; CE07309; WBGene00019066; WP:CE07309
K07E8.3 K07E8.3 P W All gene names: sdz-24; K07E8.3; 2A949; CE29512; WBGene00019495; WP:CE29512
M116.4 M116.4 P W All gene names: fbxb-73; sdz-25; M116.4; 4J168; CE21081; WBGene00019791; WP:CE21081
R02C2.2 R02C2.2 P W All gene names: kin-34; R02C2.2; 5A724; CE39025; WBGene00019815; WP:CE39025 WormBase description: protein kinase
R06A4.6 R06A4.6 P W All gene names: sdz-26; R06A4.6; 2O669; CE18113; WBGene00011049; WP:CE18113 WormBase description: similar to PES-10
R07H5.4 R07H5.4 P W All gene names: sdz-27; R07H5.4; 4L953; CE12556; WBGene00011124; WP:CE12556
R52.1 R52.1 P W All gene names: bath-16; sdz-28; R52.1; 2C421; CE12824; WBGene00020073; WP:CE12824
R52.10 R52.10 P W All gene names: bath-17; sdz-29; R52.10; R52.10a.1; R52.10a.2; 2C414; CE28412; WBGene00020081; WP:CE28412
T04D3.2 T04D3.2 P W All gene names: sdz-30; T04D3.2; 1N899; CE13155; WBGene00011432; WP:CE13155
T05E12.1 T05E12.1 P W All gene names: str-125; T05E12.1; 5R546; CE36191; NM_074922; WBGene00006176; WP:CE36191
T11A5.5 T11A5.5 P W All gene names: sdz-31; T11A5.5; 5K359; CE06411; WBGene00011704; WP:CE06411
T24B8.6 T24B8.6 P W All gene names: hlh-3; T24B8.6; 2J377; CE03714; NM_063537; WBGene00001950; WP:CE03714 WormBase description: hlh-3 encodes a basic helix-loop-helix transcription factor homologous to Drosophila Achaete-scute; in vitro, HLH-3 can heterodimerize, and bind an E-box-containing probe, with HLH-2, the C. elegans E/daughterless ortholog with which it is coexpressed in the nuclei of embryonic neuronal precursors. WormBase CDS description: helix-loop-helix protein
Y46G5A.27 Y46G5.FF P W
Y49F6B.5 Y49F6B.M P W
Y56A3A.14 Y56A3A.14 P W All gene names: fbxb-23; sdz-33; Y56A3A.14; Y56A3A.M; 3M997; CE22581; WBGene00013233; WP:CE22581 WormBase description: This gene encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins.
Y73C8C.7 Y73C8C.7 P W All gene names: sdz-34; Y73C8C.7; 5D584; CE20363; WBGene00022264; WP:CE20363
ZC239.12 ZC239.12 P W All gene names: sdz-35; ZC239.12; 2D498; CE15132; WBGene00022570; WP:CE15132
ZK1058.6 ZK1058.6 P W All gene names: nit-1; ZK1058.6; 3F11; CE01106; WBGene00014206; WP:CE01106 WormBase description: Nitrilase
ZK1251.7 ZK1251.7 P W All gene names: sdz-36; ZK1251.7; 4K455; CE03854; WBGene00014242; WP:CE03854
ZK177.10 ZK177.10 P W All gene names: tbx-35; ZK177.10; 2F810; CE40000; NM_062658; TBX35_CAEEL; WBGene00006554; WP:CE40000
ZK673.10 ZK673.10 P W All gene names: sdz-37; ZK673.10; 2K755; CE16744; WBGene00014064; WP:CE16744
ZK892.7 ZK892.7 P W All gene names: sdz-38; ZK892.7; 2K270; CE01729; Q09620_CAEEL; WBGene00014131; WP:CE01729 WormBase description: Zinc finger, C2H2 type