|Gene list file name:||Szewczyk2006_T4_down_CeMM-vs-NGM|
|Type of gene identifier:||MA primer pair (sjj)|
|Description:||Szewczyk2006 et al 2006 Table 4: 26 genes that are downregulated in CeMM(Chemical defined minium medium) versus NGM(nematode growth medium)|
|Organism:||Caenorhabditis elegans (nematode)|
|Gene list type:||Experimental|
Gene name Source Gene ID Annotation Date Added by
C10H11.1 C10H11.1 P W All gene names: C10H11.1; 1F327; CE29081; WBGene00015691; WP:CE29081
C18C4.5 C18C4.5 P W All gene names: C18C4.5; 5G32; CE30729; CE35246; WBGene00015966; WP:CE30729; WP:CE35246
C47B2.6 C47B2.6 P W All gene names: C47B2.6; 1N569; CE17566; CE38295; O62107_CAEEL; WBGene00008132; WP:CE17566; WP:CE38295 WormBase description: The C47B2.6 gene encodes an ortholog of the human gene UDP-GALACTOSE-4-EPIMERASE (GALE; OMIM:606953), which when mutated leads to galactose epimerase deficiency (OMIM:230350). WormBase CDS description: NAD dependant epimerase/dehydratase family
C55B7.1 C55B7.1 P W All gene names: glh-2; C55B7.1; 1H93; CE09012; GLH2_CAEEL; NM_059475; WBGene00001599; WP:CE09012 WormBase description: glh-2 encodes a putative DEAD-box RNA helicase that contains six CCHC zinc fingers and is homologous to Drosophila VASA, a germ-line-specific, ATP-dependent, RNA helicase; at non-permissive temperatures, GLH-2 plays a role in germ-line development and fertility, specifically in regulating the normal extent of germ-line proliferation, oogenesis, and the production of functional sperm; GLH-2 activity may also be required for the wild-type morphology of P granules and for localization of several protein components, but not accumulation of P granule mRNA components; GLH-2 interacts in vitro with itself and with KGB-1, a JNK-like MAP kinase; GLH-2 is a constitutive P granule component and thus, with the exception of mature sperm, is expressed in germ cells at all stages of development; GLH-2 is cytoplasmic in oocytes and the early embryo, while perinuclear in all later developmental stages as well as in the distal and medial regions of the hermaphrodite gonad; GLH-2 is expressed at barely detectable levels in males. WormBase CDS description: RNA helicase
F02A9.4 F02A9.4 P W All gene names: F02A9.4; F02A9.5; 3K174; CE00136; CE33612; WBGene00008514; WP:CE00136; WP:CE33612; YLPC_CAEEL; YLPD_CAEEL WormBase description: F02A9.4 is orthologous to the human gene SIMILAR TO METHYLCROTONOYL-COENZYME A CARBOXYLASE 2 (BETA) (MCCC2; OMIM:210210), which when mutated leads to disease.
F22B7.5 F22B7.5 P W All gene names: dnj-10; F22B7.5; F22B7.5a.1; F22B7.5a.2; 3J721; CE24911; CE27991; DNJ10_CAEEL; NM_066500; NM_066501; WBGene00001028; WP:CE24911; WP:CE27991 WormBase description: This gene encodes a protein containing a DnaJ ('J') domain that is predicted to be mitochondrial.
F25D1.1 F25D1.1 P W All gene names: tag-93; F25D1.1; 5L14; CE05722; CE36134; WBGene00006460; WP:CE05722; WP:CE36134 WormBase description: protein phosphatase
F42H10.7 F42H10.7 P W All gene names: F42H10.7; 3J578; CE00169; CE37109; DGC14_CAEEL; WBGene00018371; WP:CE00169; WP:CE37109
F49E8.2 F49E8.2 P W All gene names: F49E8.2; 4I315; CE28407; WBGene00018636; WP:CE28407
F56A6.1 F56A6.1 P W All gene names: F56A6.1; 1B93; CE25906; CE33401; WBGene00018921; WP:CE25906; WP:CE33401
F59A1.10 F59A1.10 P W All gene names: F59A1.10; 5S141; CE18794; WBGene00010296; WP:CE18794
F59D8.C F59D8.C P W
K05C4.5 K05C4.5 P W All gene names: K05C4.5; K05C4.5.1; K05C4.5.2; 1P339; CE19973; WBGene00010582; WP:CE19973
K07D8.1 K07D8.1 P W All gene names: mup-4; K07D8.1; K07D8.1.1; K07D8.1.2; K07D8.1.3; K07D8.2; 3I570; CE29511; NM_066244; Q21281_CAEEL; WBGene00003497; WP:CE29511 WormBase description: The mup-4 gene encodes a novel transmembrane protein required for junctional attachments between hypodermis and muscle, and between the apical epithelial surface and the cuticular matrix.
K12D12.1 K12D12.1 P W All gene names: K12D12.1; 2M169; CE06184; TOP2_CAEEL; WBGene00010785; WP:CE06184 WormBase description: DNA topoisomerase II
T02B5.1 T02B5.1 P W All gene names: T02B5.1; 5O644; CE27775; WBGene00011362; WP:CE27775 WormBase description: carboxylesterase
T07A9.6 T07A9.6 P W All gene names: daf-18; T07A9.6; 4B174; CE26385; NM_067525; WBGene00000913; WP:CE26385 WormBase description: daf-18 encodes a lipid phosphatase homologous to the human PTEN tumor suppresor (OMIM:601728, mutated in Cowden disease and several cancers); DAF-18 negatively regulates insulin-like signaling mediated by DAF-2/IR and AGE-1/PI3K and thus plays a role in metabolism, development, and longevity; based on sequence and genetic analysis, DAF-18 is predicted to dephosphorylate AGE-1-generated PIP3 in order to limit activation of the downstream AKT-1 and AKT-2 kinases that negatively regulate DAF-16.
T10F2.3 T10F2.3 P W All gene names: ulp-1; T10F2.3; 3G256; CE33694; NM_065694; SENP_CAEEL; WBGene00006736; WP:CE33694
T21B10.3 T21B10.3 P W All gene names: T21B10.3; 2J227; CE23993; WBGene00011885; WP:CE23993
T22B7.7 T22B7.7 P W All gene names: T22B7.7; CE13952; WBGene00020674; WP:CE13952; XG272
Y39A1A.12 Y39A1A.12 P W All gene names: Y39A1A.12; Y39A1A.12.1; Y39A1A.12.2; 3L735; CE19131; WBGene00012650; WP:CE19131 WormBase description: Y39A1A.12 encodes a homolog of origin recognition complex 1, which is also a distant paralog of CDC-6; both Y39A1A.12 and CDC-6 encode homologs of the origin complex which, in yeast, controls the start of DNA replication; whether either Y39A1A.12 or CDC-6 are required for this function in C. elegans, individually or in parallel, is unknown. WormBase CDS description: ATPases associated with various cellular activities (AAA)
ZC317.7 ZC317.7 P W All gene names: ZC317.7; 5F946; CE15179; WBGene00022590; WP:CE15179
ZC395.8 ZC395.8 P W All gene names: ZC395.8; 3G358; CE33011; Q9GYG1_CAEEL; WBGene00022598; WP:CE33011
ZK1320.9 ZK1320.9 P W All gene names: ZK1320.9; ZK1320.9.1; ZK1320.9.2; 2J974; CE01707; WBGene00014258; WP:CE01707 WormBase description: acetate utilisation protein
ZK593.8 ZK593.8 P W All gene names: ZK593.8; 4L703; CE28722; WBGene00014004; WP:CE28722
ZK856.13 ZK856.9 P W