Chen et al 2006, S2 X-box regulated genes, 83 genes

Gene list file name:Chen2006_S2_X-box-regulated_genes
Type of gene identifier:Cosmid name
Description:Chen et al 2006 S2 X-box regulated genes  
Organism:Caenorhabditis elegans (nematode)
Gene list type:Experimental

Gene name             Source Gene ID          Annotation                                                  Date       Added by    

B0250.2 B0250.2 P W All gene names: B0250.2; 5U948; CE18479; WBGene00007119; WP:CE18479
B0495.7 B0495.7 P W All gene names: B0495.7; B0495.7.1; B0495.7.2; 2H992; CE29550; WBGene00015206; WP:CE29550; YP67_CAEEL
C01B12.4 C01B12.4 P W All gene names: C01B12.4; 2A297; CE34642; WBGene00015287; WP:CE34642
C02H7.1 C02H7.1 P W All gene names: C02H7.1; CE06757; WBGene00015363; WP:CE06757; XB385
C04C3.3 C04C3.3 P W All gene names: C04C3.3; C04C3.3.1; C04C3.3.2; 4E167; CE27647; ODPB_CAEEL; WBGene00015413; WP:CE27647 WormBase description: pyruvate dehydrogenase
C18H9.8 C18H9.8 P W All gene names: C18H9.8; 2G971; CE27719; WBGene00016005; WP:CE27719
C25G4.11 C25G4.11 P W All gene names: C25G4.11; CE28207; WBGene00007737; WP:CE28207
C25G4.5 C25G4.5 P W All gene names: dpy-26; C25G4.5; 4N212; CE08398; NM_069977; WBGene00001085; WP:CE08398 WormBase description: SDC-1, SDC-2, and SDC-3 proteins form a complex (detectable by coimmunoprecipitation); these three proteins, in turn, colocalize with DPY-26, DPY-27, and MIX-1 proteins both on a transgenic her-1(+) array and on the X chromosome.
C26B2.4 C26B2.4 P W All gene names: nhr-258; C26B2.4; 4I809; CE34709; WBGene00016126; WP:CE34709 WormBase description: nuclear hormone receptor
C27A7.4 C27A7.4 P W All gene names: che-11; mev-4; C27A7.4; 5M626; CE39480; NM_073646; WBGene00000490; WP:CE39480 WormBase description: che-11 encodes a large, unfamiliar protein with orthologs in vertebrates and arthropods (e.g., KIAA0590 and CG11838-PA) and in Chlamydomonas (IFT140), as well as distant similarity to OSM-1 and ZK520.1; che-11 is required for normal synthesis of sensory cilia (via intraflagellar transport) in sensory neurons, osmotic avoidance, and dauer formation.
C27A7.8 C27A7.8 P W All gene names: C27A7.8; 5M633; CE34711; WBGene00007758; WP:CE34711
C27F2.1 C27F2.1 P W All gene names: C27F2.1; 3G79; CE38940; WBGene00016165; WP:CE38940
C33G8.6 C33G8.6 P W All gene names: nhr-42; C33G8.6; 5H479; CE17496; NHR42_CAEEL; NM_072370; WBGene00003632; WP:CE17496 WormBase description: zinc finger protein
C38D4.8 C38D4.8 P W All gene names: arl-query; bbs-3; C38D4.8; 3F900; ARL6_CAEEL; CE00921; NM_065592; WBGene00000193; WP:CE00921 WormBase description: arl-6 encodes an ADP-Ribosylation factor-Like member of the Ras superfamily of small GTP-binding proteins and is a predicted homolog of the human ARL6 gene, identified as the gene that underlies Bardet-Biedl syndrome type 3; GFP-tagged ARL-6 undergoes intraflagellar transport (IFT) in the ciliary axoneme, implicating ARL-6 in ciliary transport; arl-6 is expressed in amphid and phasmid ciliated sensory neurons. WormBase CDS description: ADP-ribosylation factor
C47E8.6 C47E8.6 P W All gene names: C47E8.6; 5P171; CE35839; WBGene00008144; WP:CE35839
C48B6.8 C48B6.8 P W All gene names: C48B6.8; 1H494; CE32166; WBGene00016744; WP:CE32166
C54C6.6 C54C6.6 P W All gene names: C54C6.6; 3E626; CE33367; WBGene00008288; WP:CE33367 WormBase description: DUF667 domain family
D1009.5 D1009.5 P W All gene names: dylt-2; xbx-2; D1009.5; CE04289; NM_077110; WBGene00017014; WP:CE04289; XJ558
E02H1.6 E02H1.6 P W All gene names: E02H1.6; 2J887; CE28286; KAD6_CAEEL; WBGene00008458; WP:CE28286 WormBase description: E02H1.6 encodes an ortholog of human TAF9 (OMIM:600822; also known as AK6, adrenal gland protein AD-004 like protein, ADLP) and of S. cerevisiae Fap7p; like its human ortholog, E02H1.6 is nuclear, and is predicted to likewise be a TATA box binding protein (TBP)-associated factor mediating activation of RNA polymerase II; E02H1.6 prefers ATP and dATP as phosphate donors; E02H1.6's biochemical activity is unusual, since it also prefers AMP and dAMP as substrates, and tolerates CMP, TMP and shikimate acid as substrates as well; since yeast Fap7p promotes pre-rRNA cleavage, E02H1.6 may be multifunctional; in RNAi assays, E02H1.6 is required for normally fast growth. WormBase CDS description: ATP binding protein
E04A4.6 E04A4.6 P W All gene names: E04A4.6; 4F510; CE16967; WBGene00017120; WP:CE16967
F02D8.3 F02D8.3 P W All gene names: xbx-1; F02D8.3; 5P459; CE39142; NM_074282; WBGene00006960; WP:CE39142
F09G2.2 F09G2.2 P W All gene names: F09G2.2; 5H677; CE37626; WBGene00017311; WP:CE37626
F09G2.8 F09G2.8 P W All gene names: F09G2.8; F09G2.8.1; F09G2.8.2; 5H670; CE09303; PLDL_CAEEL; WBGene00017316; WP:CE09303
F13H10.4 F13H10.4 P W All gene names: F13H10.4; 4L782; CE05625; GCS1_CAEEL; WBGene00008775; WP:CE05625 WormBase description: F13H10.4 is orthologous to the human gene A-GLUCOSIDASE I (GCS1; OMIM:601336), which when mutated leads to disease.
F13H8.2 F13H8.2 P W All gene names: F13H8.2; 2G563; CE27127; WBGene00017435; WP:CE27127 WormBase description: beta transducin Trp-Asp domains
F19H8.3 F19H8.3 P W All gene names: arl-3; F19H8.3; 2O895; ARL3_CAEEL; CE15872; NM_064636; WBGene00000188; WP:CE15872 WormBase description: arl-3 encodes a member of the ARL (ADP-ribosylation factor(ARF)-like) family of proteins which are very similar to ARF proteins but lack the ability to stimulate ADP ribosylation by cholera toxin; as loss of arl-3 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, the precise role of ARL-3 is not yet known. WormBase CDS description: ADP-ribosylation factors (Arf family) (contains ATP/GTP binding P-loop)
F20D12.3 F20D12.3 P W All gene names: bbs-2; F20D12.3; 4I701; CE04433; NM_068924; WBGene00000242; WP:CE04433 WormBase description: bbs-2 is orthologous to human BBS2 (OMIM:606151, mutated in Bardet-Biedl syndrome 2); while the function of BBS-2 is unknown, it shares conserved domains with its human paralogs BBS1 and BBS7, which also are mutated in other Bardet-Biedl syndromes.
F22B5.10 F22B5.10 P W All gene names: F22B5.10; F22B5.10.1; F22B5.10.2; 2I757; CE02196; WBGene00009045; WP:CE02196
F32A6.2 F32A6.2 P W All gene names: F32A6.2; CE34008; WBGene00017973; WP:CE34008; XF921
F32E10.6 F32E10.6 P W All gene names: F32E10.6; F32E10.6.1; F32E10.6.2; 4I344; CE04479; WBGene00017993; WP:CE04479
F33H1.3 F33H1.3 P W All gene names: F33H1.3; 2K463; CE01569; WBGene00009364; WP:CE01569; YQW3_CAEEL
F36H1.6 F36H1.6 P W All gene names: alh-3; F36H1.6; 4L789; CE05817; NM_069653; WBGene00000109; WP:CE05817 WormBase description: alh-3 encodes an aldehyde dehydrogenase predicted to be mitochondrial. WormBase CDS description: formyltetrahydrofolate dehydrogenase
F38G1.1 F38G1.1 P W All gene names: che-2; F38G1.1; F38G1.1.1; F38G1.1.2; CE25876; NM_075705; WBGene00000484; WP:CE25876; XB103 WormBase description: che-2 encodes a protein that contains G-protein beta-like WD-40 repeats that affects chemotaxis, dauer formation, and longevity; expressed in the cilia of most ciliated sensory neurons, some head neurons, and male tail rays. WormBase CDS description: G-beta-repeats
F39B2.6 F39B2.6 P W All gene names: rps-26; F39B2.6; F39B2.6.1; F39B2.6.2; 1P353; CE16012; NM_061170; RS26_CAEEL; WBGene00004495; WP:CE16012 WormBase description: rps-26 encodes a small ribosomal subunit S26 protein; by homology, RPS-26 is predicted to function in protein biosynthesis; in C. elegans, RPS-26 activity is required for embryonic, larval, and germline development, as well as normal locomotion and body morphology. WormBase CDS description: 40S ribosomal protein S26
F40A3.2 F40A3.2 P W All gene names: F40A3.2; 5I361; CE10144; WBGene00018217; WP:CE10144
F41E7.9 F41E7.9 P W All gene names: F41E7.9; CE34858; WBGene00009625; WP:CE34858; XK930
F56A3.4 F56A3.4 P W All gene names: spd-5; F56A3.4; 1F740; CE28834; NM_059138; SPD5_CAEEL; WBGene00004955; WP:CE28834
F56H1.5 F56H1.5 P W All gene names: F56H1.5; 1G338; CE17916; WBGene00018995; WP:CE17916
F58B4.3 F58B4.3 P W All gene names: F58B4.3; 5L409; CE06013; WBGene00010236; WP:CE06013
F58H1.2 F58H1.2 P W All gene names: F58H1.2; 5M409; CE06026; WBGene00010285; WP:CE06026
H10D18.1 H10D18.1 P W All gene names: H10D18.1; 5E295; CE20956; WBGene00019177; WP:CE20956
H41C03.3 H41C03.3 P W All gene names: H41C03.3; H41C03.3.1; H41C03.3.2; 2G139; CE32055; WBGene00019270; WP:CE32055
K07G5.3 K07G5.3 P W All gene names: K07G5.3; 1H741; CE06131; WBGene00010642; WP:CE06131 WormBase description: C2 domain
K08D12.1 K08D12.1 P W All gene names: pbs-1; K08D12.1; 4C474; CE25941; NM_067724; WBGene00003947; WP:CE25941 WormBase description: pbs-1 encodes a protease subunit with highest similarity to vertebrate proteasome subunit beta type 6 that affects fertility, embryonic viability, locomotion, and larval viability
K08D12.2 K08D12.2 P W All gene names: K08D12.2; 4C477; CE32468; WBGene00019536; WP:CE32468 WormBase description: K08D12.2 is orthologous to the human gene XRP2 PROTEIN (RP2; OMIM:312600), which when mutated leads to disease.
M04C9.5 M04C9.5 P W All gene names: M04C9.5; 1J939; CE12408; WBGene00010860; WP:CE12408 WormBase description: Uncloned locus that affects development of the amphid and phasmid neurons, chemotaxis, dauer formation, and body length. WormBase CDS description: serine/threonine kinase (CDC2/CDKX subfamily)
R01H10.6 R01H10.6 P W All gene names: bbs-5; R01H10.6; 3L348; CE01042; NM_066871; Q21626_CAEEL; WBGene00010974; WP:CE01042
R01H2.5 R01H2.5 P W All gene names: R01H2.5; 3I150; CE00804; Q21632_CAEEL; WBGene00019813; WP:CE00804
R01H2.6 R01H2.6 P W All gene names: ubc-18; R01H2.6; 3I158; CE25067; NM_066140; WBGene00006713; WP:CE25067 WormBase description: ubc-18 encodes an E2 ubiquitin-conjugating enzyme related to human UBCH7 (OMIM:603731); UBC-18 activity is required for normal growth and reproduction, and UBC-18 functions redundantly with LIN-35/Rb and other class B synthetic multivulval (SynMuv) gene products to regulate pharyngeal morphogenesis during embryonic development; ubc-18 transcripts are detected in the germline, embryos, late larval stages, and adults, suggesting that UBC-18 may function maternally to regulate several aspects of C. elegans development; the substrates of UBC-18 are not yet known.
R05H10.5 R05H10.5 P W All gene names: R05H10.5; 2P153; CE18107; GPX2_CAEEL; WBGene00011045; WP:CE18107 WormBase description: Glutathione peroxidases
R07E3.6 R07E3.6 P W All gene names: R07E3.6; CE02300; WBGene00011107; WP:CE02300; XK939
R31.3 R31.3 P W All gene names: osm-6; R31.3; 5M406; CE27774; NM_171545; WBGene00003886; WP:CE27774 WormBase description: osm-6 males are defective in their response to hermaphrodite-derived diffusible cues. WormBase CDS description: N-acetyllactosamine synthase
T02D1.6 T02D1.6 P W All gene names: T02D1.6; 4S352; CE30684; WBGene00011372; WP:CE30684 WormBase description: 7 transmembrane receptor (rhodopsin family)
T02G5.2 T02G5.2 P W All gene names: T02G5.2; 2H385; CE39397; WBGene00020162; WP:CE39397
T05C12.8 T05C12.8 P W All gene names: T05C12.8; 2I478; CE02320; WBGene00011471; WP:CE02320
T12B3.1 T12B3.1 P W All gene names: T12B3.1; T12B3.D; 4I149; CE21176; WBGene00020444; WP:CE21176 WormBase description: phosphatase
T24B8.2 T24B8.2 P W All gene names: T24B8.2; 2J345; CE03710; WBGene00011976; WP:CE03710 WormBase description: Yeast SNF7 like protein
T25F10.5 T25F10.5 P W All gene names: bbs-8; T25F10.5; 5H242; CE31071; NM_072310; WBGene00000244; WP:CE31071 WormBase description: bbs-8 encodes a tetratricopeptide repeat (TPR)-containing protein that is orthologous to the human Bardet-Biedl syndrome protein, BBS8; in C. elegans, bbs-8 activity is required for cilia biogenesis and function; accordingly, bbs-8 mutant animals display odorant chemotaxis defects and exhibit both aberrant motility and abnormal localization of at least two intraflagellar transport (IFT) protein markers; a BBS-8::GFP translational fusion is expressed exclusively in ciliated head and tail neurons, where it localizes predominantly to the base of cilia, known as the ciliary transition zone; BBS-8::GFP is also observed moving bidirectionally (anterograde and retrograde) along the ciliary axoneme; DNA sequences upstream of bbs-8 contain X box DNA binding sites, suggesting that bbs-8 expression may be regulated by the DAF-19 RFX-type transcription factor.
T27B1.1 T27B1.1 P W All gene names: osm-1; T27B1.1; CE39420; NM_078280; WBGene00003883; WP:CE39420; XR165 WormBase description: osm-1 encodes a predicted intraflagellar transport (IFT) raft protein and is a presumptive cargo molecule for kinesin-II, and OSM-1 is required along with OSM-6 for the proper assembly of the middle segments of sensory cilia; osm-1 may act in a pathway with avr-14 to affect resistance to ivermectin-induced cessation of pumping, and mutants are defective in avoidance of solutions of high osmotic strength. WormBase CDS description: leucine zipper transcription factor(weak)
T28F3.6 T28F3.6 P W All gene names: T28F3.6; 4S242; CE20116; WBGene00012132; WP:CE20116
W02B12.2 W02B12.2 P W All gene names: rsp-2; srp-4; W02B12.2; W02B12.2.1; W02B12.2.2; 2L742; CE03762; CeSRp40; NM_064040; RSP2_CAEEL; WBGene00004699; WBGene00005645; WP:CE03762 WormBase description: pre-mRNA splicing factor like protein
W02F12.2 W02F12.2 P W All gene names: W02F12.2; 5H174; ACASE_CAEEL; CE33333; WBGene00020947; WP:CE33333
Y105E8A.5 Y105E8A.5 P W All gene names: bbs-1; Y105E8A.5; 1O962; CE25181; NM_170937; WBGene00000241; WP:CE25181
Y110A7A.20 Y110A7A.20 P W All gene names: Y110A7A.20; 1F671; CE23246; WBGene00022465; WP:CE23246
Y37D8A.17 Y37D8A.17 P W All gene names: Y37D8A.17; 3O12; CE20221; TMM33_CAEEL; WBGene00012555; WP:CE20221
Y37D8A.18 Y37D8A.18 P W All gene names: Y37D8A.18; 3O17; CE20222; RT10_CAEEL; WBGene00012556; WP:CE20222
Y41G9A.1 Y41G9A.1 P W All gene names: osm-5; Y41G9A.1; CE28361; NM_076110; WBGene00003885; WP:CE28361; XD609 WormBase description: The osm-5 gene encodes a homolog of the murine cystic kidney disease gene Tg737 that is required for the production of cilia in sensory neurons.
Y54F10AR.1 Y54F10AR.1 P W All gene names: Y54F10AR.1; 3D660; CE26182; WBGene00021854; WP:CE26182
Y57A10A.16 Y57A10A.16 P W All gene names: Y57A10A.16; 2M498; CE22619; WBGene00013259; WP:CE22619
Y57A10A.35 Y57A10A.35 P W All gene names: Y57A10A.35; 2M499; CE35113; WBGene00013272; WP:CE35113
Y73C8C.8 Y73C8C.8 P W All gene names: Y73C8C.8; 5D590; CE28271; WBGene00022265; WP:CE28271
Y75B8A.12 Y75B8A.12 P W All gene names: osm-12; Y75B8A.12; Y75B8A.P; 3N280; CE23024; NM_067184; Q9XW70_CAEEL; WBGene00003892; WP:CE23024
ZC168.1 ZC168.1 P W All gene names: ncx-3; ZC168.1; 4L485; CE06567; NM_069583; WBGene00003568; WP:CE06567 WormBase description: ncx-3 encodes a predicted transmembrane Na/Ca exchanger; by homology, NCX-3 is predicted to function as a plasma membrane protein that regulates intracellular calcium homeostasis by moving calcium either into or out of cells, depending upon the net electrochemical force; however, as loss of ncx-3 function via RNA-mediated interference (RNAi) does not result in any obvious abnormalities, the precise role of NCX-3 in C. elegans development and/or behavior is not yet known. WormBase CDS description: sodium/calcium exchanger protein like
ZK418.3 ZK418.3 P W All gene names: ZK418.3; 3I161; CE38989; WBGene00022733; WP:CE38989
ZK520.3 ZK520.3 P W All gene names: ZK520.3; 3O770; CE16728; WBGene00013992; WP:CE16728 WormBase description: Uncloned locus that affects development of the amphid and phasmid neurons, chemostaxis, dauer formation, and lifespan.
ZK682.7 ZK682.7 P W All gene names: ZK682.7; 5J772; CE36080; WBGene00022790; WP:CE36080