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Gene list Number of genes View, Compare, Cluster Copy gene list Date
Baugh et al 2003, class M
Baugh et al 2005, Supplymental Dataset, class M
6062   Copy Jul 24 06
Baugh et al 2003, subclass SE_83min
Baugh et al 2005, Supplymental Dataset, subclass SE_83min
123   Copy Jul 24 06
Baugh et al 2003, subclass E_23min
Baugh et al 2005, Supplymental Dataset, subclass E_23min
925   Copy Jul 24 06
Baugh et al 2003, subclass ETmax_41min
Baugh et al 2005, Supplymental Dataset, subclass ETmax_41min
59   Copy Jul 24 06
Baugh et al 2003, class ET
Baugh et al 2005, Supplymental Dataset, class ET
1356   Copy Jul 24 06
Baugh et al 2003, subclass MDpd_PC32
Baugh et al 2005, Supplymental Dataset, subclass MDpd_PC32
155   Copy Jul 24 06
Baugh et al 2003, subclass ETmax_101min
Baugh et al 2005, Supplymental Dataset, subclass ETmax_23min
69   Copy Jul 24 06
Baugh et al 2003, class SM
Baugh et al 2005, Supplymental Dataset, class SM
3357   Copy Jul 24 06
Baugh et al 2003, subclass ETmax_83min
Baugh et al 2005, Supplymental Dataset, subclass ETmax_83min
278   Copy Jul 24 06
Baugh et al 2003, subclass SE_122min
Baugh et al 2005, Supplymental Dataset, subclass SE_93min
93   Copy Jul 24 06
Baugh et al 2003, subclass E_83min
Baugh et al 2005, Supplymental Dataset, subclass E_425min
425   Copy Jul 24 06
Baugh et al 2003, class MD
Baugh et al 2005, Supplymental Dataset, class MD
1764   Copy Jul 24 06
Baugh et al 2003, class SET
Baugh et al 2005, Supplymental Dataset, class SET
441   Copy Jul 24 06
Baugh et al 2003, class SMD
Baugh et al 2005, Supplymental Dataset, class SMD
953   Copy Jul 24 06
Baugh et al 2003, subclass ETmax_101min
Baugh et al 2005, Supplymental Dataset, subclass ETmax_101min
216   Copy Jul 24 06
Baugh et al 2003, subclass SE_186min
Baugh et al 2005, Supplymental Dataset, subclass SE_186min
53   Copy Jul 24 06
Baugh et al 2003, subclass E_66min
Baugh et al 2005, Supplymental Dataset, subclass E_66min
284   Copy Jul 24 06
Baugh et al 2003, subclass MDpd_53min
Baugh et al 2005, Supplymental Dataset, subclass MDpd_53min
733   Copy Jul 24 06
Baugh et al 2003, subclass E_PC32
Baugh et al 2005, Supplymental Dataset, subclass E_31min
31   Copy Jul 24 06
Baugh et al 2003, subclass E_41min
Baugh et al 2005, Supplymental Dataset, subclass E_41min
361   Copy Jul 24 06
Baugh et al 2003, subclass SE_23min
Baugh et al 2005, Supplymental Dataset, subclass SE_23min
170   Copy Jul 24 06
Baugh et al 2003, class E
Baugh et al 2005, Supplymental Dataset, class E
3678   Copy Jul 24 06
Baugh et al 2003, subclass SE_53min
Baugh et al 2005, Supplymental Dataset, subclass SE_53min
342   Copy Jul 24 06
Baugh et al 2003, subclass SE_66min
Baugh et al 2005, Supplymental Dataset, subclass SE_66min
55   Copy Jul 24 06
Baugh et al 2003, subclass ETmax_53min
Baugh et al 2005, Supplymental Dataset, subclass ETmax_53min
245   Copy Sep 4 07
Baugh et al 2003, class SE
Baugh et al 2005, Supplymental Dataset, class SE
973   Copy Jul 24 06
Baugh et al 2003, subclass SE_41min
Baugh et al 2005, Supplymental Dataset, subclass SE_41min
61   Copy Jul 24 06
Baugh et al 2003, subclass MDpd_41min
Baugh et al 2005, Supplymental Dataset, subclass MDpd_41min
367   Copy Jul 24 06
Baugh et al 2003, subclass E_143min
Baugh et al 2005, Supplymental Dataset, subclass E_186min
277   Copy Jul 24 06
Baugh et al 2003, subclass MDpd_66min
Baugh et al 2005, Supplymental Dataset, subclass MDpd_159min
159   Copy Jul 24 06
Baugh et al 2003, subclass MD_23min
Baugh et al 2005, Supplymental Dataset, subclass MD_23min
551   Copy Jul 24 06
Baugh et al 2003, subclass SE_PC32
Baugh et al 2005, Supplymental Dataset, subclass SE_PC32
8   Copy Jul 24 06
Baugh et al 2003, subclass SE_101min
Baugh et al 2005, Supplymental Dataset, subclass SE_101min
97   Copy Jul 24 06
Baugh et al 2003, subclass E_122min
Baugh et al 2005, Supplymental Dataset, subclass E_122min
370   Copy Jul 24 06
Baugh et al 2003, subclass ETmax_143min
Baugh et al 2005, Supplymental Dataset, subclass ETmax_143min
125   Copy Jul 24 06
Baugh et al 2003, subclass E_143min
Baugh et al 2005, Supplymental Dataset, subclass E_143min
229   Copy Jul 24 06
Baugh et al 2003, class MET
Baugh et al 2005, Supplymental Dataset, class MET
915   Copy Jul 24 06
Baugh et al 2003, subclass ETmax_66min
Baugh et al 2005, Supplymental Dataset, subclass ETmax_66min
181   Copy Jul 24 06
Baugh et al 2003, subclass ETmax_122min
Baugh et al 2005, Supplymental Dataset, subclass ETmax_122min
118   Copy Jul 24 06
Baugh et al 2003, subclass E_101min
Baugh et al 2005, Supplymental Dataset, subclass E_101min
335   Copy Jul 24 06
Baugh et al 2003, class MDET
Baugh et al 2005, Supplymental Dataset, class MDET
44   Copy Jul 24 06
Baugh et al 2003, subclass E_53min
Baugh et al 2005, Supplymental Dataset, subclass E_53min
888   Copy Jul 24 06
Baugh et al 2003, subclass SE_143min
Baugh et al 2005, Supplymental Dataset, subclass SE_143min
67   Copy Jul 24 06
Baugh et al 2003, class MDE
Baugh et al 2005, Supplymental Dataset, class MDE
643   Copy Jul 24 06
Baugh et al 2003, class ME
Baugh et al 2005, Supplymental Dataset, class ME
2705   Copy Jul 24 06
Baugh et al 2005, PAL-1 target_score5-7
Baugh et al 2005, Supplymental Dataset, PAL-1 target genes, score 5, 6, 7
17   Copy Jul 24 06
Baugh et al 2005, PAL-1 target_score 2-4
Baugh et al 2005, Supplymental Dataset, PAL-1 target genes, score 2,3,4
145   Copy Jul 24 06
Baugh et al 2005, parrerning involved PAL-1 target
Baugh et al 2005, Fig7 and Table4, 14 PAL-1 target genes that likely involved in patterning
14   Copy Jul 24 06
Baugh et al 2005, PAL-1 target genes
Baugh et al 2005, Supplymental Dataset, 308 PAL-1 target genes
308   Copy Jul 24 06
Baugh et al 2005, PAL-1 target genes
Baugh et al 2005, T1 PAL-1 target genes
40   Copy Jul 24 06
Baugh et al 2005, validated PAL-1 target genes
Baugh et al 2005, T3 validated PAL-1 target genes
22   Copy Jul 24 06
Baugh et al 2005, PAL-1 target genes score1
Baugh et al 2005, Supplymental Dataset, PAL-1 target genes, score 1
146   Copy Jul 24 06
Bishop et al 2004 T2 Egl-9 hif-1 pathway genes
Bishop et al 2004 Table2: 6 Egl-9 hif-1 pathway genes
6   Copy Jun 9 06
Bishop et al 2004 T4 57 vhl-1 depend hif-1 indep
Bishop et al 2004 Table4: 57 vhl-1 depend hif-1 independent genes
57   Copy Jun 9 06
Bishop et al 2004 T1 Upregulated in vhl-1 vs WT
Bishop et al 2004 Table1: 30 genes Upregulated in vhl-1 vs WT
30   Copy Jun 9 06
Blacque et al 2005, T1 ciliated-cell transcriptome
Blacque et al 2005 T1 Shown are all genes (46 in total) that are enriched for SAGE tags in the ciliated-cell transcriptome (C), with R1.5-fold enrichment versus the pan-neural transcriptome (P) and R2.0-fold enrichment versus the muscle (M) and gut (G) transcriptomes, and with a canonically-positioned (Pos) putative X box (i.e., within 250 bp of the start codon). Only genes with homology to a human gene (Blast E-value < e?10) are represented.
53   Copy Jul 19 07
Blacque et al 2005, ST4 full list of X-Box-Contain
Blacque et al 2005 S42 Full List of Putative X-Box-Containing Genes: Genes are ranked by X box score (homology to the consensus X box sequence). Only X boxes with scores >10.0 and within 1500 bp upstream of the gene start codons are included. Note also that only those genes with significant homology to a human gene are shown (Blast E-value < e.10).
1572   Copy Jul 19 07
Blacque et al 2005, ST3 putative X Box genes
Blacque et al 2005 ST3 Putative X Box Sequences Used to Derive a Consensus X Box Sequence: Only genes with a restricted expression pattern in many, if not all, ciliated cells of C. elegans were considered.
22   Copy Jul 18 07
Blacque et al 2005, ST2 ciliated genes
Blacque et al 2005 ST2 SAGE tag data for 42 genes known to be expressed in most ciliated cells (e.g., IFT-related genes) or in a subset of ciliated cells (e.g., tax-1, guanylate cyclases, receptors, and channels).
41   Copy Jul 18 07
Blumenthal et al 2002, Suppl DGO
A supplimentary table showing the disease gene operons organized by disease with a short description of each gene
51   Copy Feb 21 08
Blumenthal et al 2002, Table 2
Operons containing human disease gone orthologues, an expandedlist can be found in Blumenthal2002_suppDGO.txt, the Disease Gene Orthologue supplimentary file
13   Copy Feb 21 08
Blumenthal et al 2002, Suppl KS
Operon gene pairs with confirmed spacing
472   Copy Feb 21 08
Blumenthal et al 2002, Suppl Table 1
genes confirmed to be transpliced to SL2/SL12 from cDNA clone analysis, from the worm transcriptome project, lead by Y.Kohara.
635   Copy Feb 21 08
Chen et al 2006, X-box containing genes down in da
Chen et al 2006 C. elegans genes that contain X-box motifs in their promoters, are positively correlated with daf-19 in gene expression, and have reduced expression in daf-19(-) strains
11   Copy Jul 18 07
Chen et al 2006, S2 X-box regulated genes
Chen et al 2006 S2 X-box regulated genes
83   Copy Jul 19 07
Chi et al. 2006, ST down-regulated in elf-1;dpl-1;
Chi et al 2006 Supplemental Table: 75 genes down-regulated in elf-1;dpl-1 mutant.
75   Copy Jul 19 07
Chi et al. 2006, ST variably Up in all 3 mutants
Chi et al 2006 Supplemental Table 42 genes variably up-regulated in all three mutants.
42   Copy Jul 19 07
Chi et al. 2006, ST other lin-35/elf-1/dpl-1 regul
Chi et al 2006 Supplemental Table: lin-35/elf-1/dpl-1 regulated genes that not in group.
24   Copy Jul 18 07
Chi et al. 2006, ST Up-reguulated in lin-35
Chi et al 2006 Supplemental Table 88 genes up-regulated in lin-35 mutant.
88   Copy Jul 19 07
Chi et al. 2006, ST Commonly down in mutants
Chi et al 2006 Summplement Table, 43 genes commonly down-regulated in all three mutants.
43   Copy Jul 18 07
Custodia et al 2001 T2 Cytochrome P450
Custodia et al 2001 Table2: Cytochrome P450
16   Copy Jun 9 06
Custodia et al 2001 T2 heat shock
Custodia et al 2001 Table2: heat shock
6   Copy Jun 9 06
Custodia et al 2001 T2 Yolk proteins
Custodia et al 2001 Table2: Yolk proteins
5   Copy Jun 9 06
Custodia et al 2001 T2 Metallothionein
Custodia et al 2001 Table2: Metallothionein
1   Copy Jun 9 06
Custodia et al 2001 T2 Glut-S-transferase
Custodia et al 2001 Table2: Glut-S-transferase
10   Copy Jun 9 06
Denver et al 2005, differentially expressed in MA
Denver et al 2005 Supplement Table 1: 662 genes that differentially expressed in MA(Mutation Accumulation) lines.
662   Copy Jul 19 07
Denver et al 2005, differentially expressed in NI
Denver et al 2005 Supplement Table 2: 123 genes that differentially expressed in NI(Natual Isolate) lines.
123   Copy Jul 19 07
Dybbs et al 2005, unc-43 vs wt differ genes
Dybbs2005 et al 2005, Fig3, reduced expression in unc-43(n1186) compared with wt (fold-change <-0.5, p<0.01)
45   Copy Jul 24 06
Dybbs et al 2005, missense and nonsense genes
Dybbs2005 et al 2005, Supplymental Table1,List of Missense and Nonsense Alleles
239   Copy Jul 24 06
Dybbs et al 2005, tom-1 vs wt different genes
Dybbs2005 et al 2005, reduced expression in tom-1(nu468) compared with wt (fold-change <-0.5, p<0.01)
21   Copy Jul 24 06
Fox et al 2005, S14/T2 Acetylcholine Receptor Sub
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
17   Copy Jul 18 07
Fox et al 2005 S14/T2 Neuropeptide Processing & S
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
7   Copy Jul 18 07
Fox et al 2005 S14/T2 Adhesion Proteins in unc-4:
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
18   Copy Jul 19 07
Fox et al 2005, S15 Expressed only in unc-4::GFP
Fox et al 2005 Additional File 15: Genes Expressed only in unc-4::GFP neurons.
968   Copy Jul 19 07
Fox et al 2005, S14/T2 Stomatin Subunit
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
7   Copy Jul 18 07
Fox et al 2005 S14/T2 Adhesion Proteins in unc-4:
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
25   Copy Jul 19 07
Fox et al 2005, S14/T2 Neuropeptides Subunit
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
32   Copy Jul 19 07
Fox et al 2005, S14/T2 Ligand-gated ion channel S
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
9   Copy Jul 18 07
Fox et al 2005, S14/T2 Neuropeptide Receptor Subu
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
9   Copy Jul 18 07
Fox et al 2005, S11 previously unc-4::GFP neurons
Fox et al 2005 Additional File 11: Genes previously known to be expressed in unc-4::GFP neurons. Published literature and wormbase http://www.wormbase.org were searched to identify 27 genes that are expressed in embryonic neurons that also express unc-4::GFP (I5, DA, SAB).
27   Copy Jul 19 07
Fox et al 2005, S14/T2 Wingless Signaling Subunit
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
12   Copy Jul 19 07
Fox et al 2005, S14/T2 Potassium Channels Subunit
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
23   Copy Jul 19 07
Fox et al 2005, S14/T2 Endocytosis Subunit in unc
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
21   Copy Jul 19 07
Fox et al 2005 S14/T2 TGF-beta-like signaling pep
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
8   Copy Jul 18 07
Fox et al 2005, S14/T2 Acetylcholine Receptor Sub
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
8   Copy Jul 19 07
Fox et al 2005, S10 N2 Enriched Genes
Fox et al 2005 Additional File 10: genes are enriched 1.7fold (FDR .1%) in N2 cells compared to unc-4::GFP neurons.
1586   Copy Jul 19 07
Fox et al 2005, S14/T2 Exocytosis and Neurotransm
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
16   Copy Jul 19 07
Fox et al 2005, S14/T2 Innexins
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
6   Copy Jul 18 07
Fox et al 2005, S14/T2 Calcium Channels subunit i
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
11   Copy Jul 19 07
Fox et al 2005 S14/T2 Transcription factor Subuni
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
154   Copy Jul 19 07
Fox et al 2005, S14/T2 Other G-protein Signaling
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
13   Copy Jul 18 07
Fox et al 2005, S14/T2 Synapse Associated Subunit
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
11   Copy Jul 18 07
Fox et al 2005, S14/T2 Serpentine Receptors Subuni
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
113   Copy Jul 19 07
Fox et al 2005, S14/T2 DEG/ENaC Subunit in unc-4:
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
3   Copy Jul 18 07
Fox et al 2005 S14/T2 Neurotransmitter-gated meta
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
8   Copy Jul 19 07
Fox et al 2005, S14/T2 G-proteins Subunit in unc-
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
10   Copy Jul 19 07
Fox et al 2005, S14/T2 Axon Guidance and Outgrowt
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
15   Copy Jul 19 07
Fox et al 2005, S9 unc-4::GFP Enriched Genes Trans
Fox et al 2005 Supplement6: 1012 unc-4::GFP Enriched Genes Transcripts elevated 1.7 fold above baseline at a FDR .1%.
1012   Copy Jul 19 07
Fox et al 2005, S14/T2 Vesicle Loading Subunit
Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.
13   Copy Jul 19 07
Gaudet et al 2002, ST1 Known pharyngeal genes
Gaudet et al 2002 Supplement Table1: Known pharyngeal genes detected by the microarrays.
18   Copy Jul 18 07
Gaudet et al 2002, ST3 candidate pharyngeal genes
Gaudet et al 2002 Supplement Table3: List of microarray positives. Positives are genes with an average log2(par-1/skn-1)>=2.0;
240   Copy Jul 19 07
Gaudet et al 2002 ST2 candidate pharyngeal genes
Gaudet et al 2002 Supplement Table2: Expression of microarray positives, assayed with GFP::HIS2B reporters. Positives are ranked according to their average log2(par-1/skn-1) ratio; *F28F9.1 has a par-1/skn-1 ratio below the cut-off for inclusion in the positive set (i.e. <2.0)
12   Copy Jul 18 07
Golden et al 2004, upreguated as aging in daf-2
Golden et al 2004, Table 2, daf-2 genes differentially expressed as a function of time
5   Copy Jul 18 07
Golden et al 2004, N2 genes upregulated as aging
Golden et al 2004, Table 2, N2 genes differentially expressed as a function of time
10   Copy Jul 18 07
Golden et al 2004, daf-2 differentially expressed
Golden et al 2004, Table 2, daf-2 genes differentially expressed as a function of time
17   Copy Jul 24 06
Golden et al 2004, downregulated as aging in daf-2
Golden et al 2004, Table 2, daf-2 genes differentially expressed as a function of time
12   Copy Jul 18 07
Golden et al 2004, N2 vs daf-2 different genes at
Golden et al 2004, Table 3, Genes that differentiate N2 and daf-2 at 19days
21   Copy Jul 24 06
Golden et al 2004, N2 differentially expressed gen
Golden et al 2004, Table 2, N2 genes differentially expressed as a function of time
22   Copy Jul 24 06
Golden et al 2004, N2 vs daf-2 age different gene
Golden et al 2004, Table 1, Genes that differentiate N2 and daf-2 with respect to age
19   Copy Jul 24 06
Golden et al 2004, N2 vs daf-2 different genes at
Golden et al 2004, Table 3, Genes that differentiate N2 and daf-2 at 9days
6   Copy Jul 24 06
Golden et al 2004, N2 vs daf-2 different genes at
Golden et al 2004, Table 3, Genes that differentiate N2 and daf-2 at 14days
4   Copy Jul 24 06
Golden et al 2004, N2 downregulated as aging
Golden et al 2004, Table 2, N2 genes differentially expressed as a function of time
13   Copy Jul 18 07
Golden et al 2004, N2 vs daf-2 different genes at
Golden et al 2004, Table 3, Genes that differentiate N2 and daf-2 at 4days
18   Copy Jul 24 06
GuhaThakurta et al 2002 T1 upregu on heat stress
GuhaThakurta et al 2002 Table1: genes upregulated on heat stress
28   Copy Jun 9 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,6)
72   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,4)
171   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,2)
78   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,5)
247   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,1)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,3)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,4)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,1)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,4)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,5)
88   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,3)
156   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,2)
81   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,6)
94   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,2)
88   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,3)
85   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,2)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,5)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,3)
137   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,4)
82   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,2)
184   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,3)
84   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,4)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,1)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,3)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,5)
98   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,5)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,6)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,1)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,6)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,2)
98   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,1)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,5)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,6)
89   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,6)
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Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,1)
158   Copy Jul 24 06
Hill et al 2000, developmentally modulated cluster
Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,4)
102   Copy Jul 24 06
Hristova et al 2005, Table4 up-regulated in lin-14
Hristova et al 2005 Table 4: 12 genes whose mRNA levels upregulated significantly in lin-4 mutant
12   Copy Jul 18 07
Hristova et al 2005, Table4 down-regulated in lin-
Hristova et al 2005 Table 4: 15 genes whose mRNA levels down regulated significantly in lin-14 mutant
16   Copy Jul 18 07
Hristova et al 2005, Table4 up-regulated in lin-14
Hristova et al 2005 Table 4: 6 genes whose mRNA levels upregulated significantly in lin-14 mutant
6   Copy Jul 18 07
Hristova et al 2005, Table4 down-regulated in lin-
Hristova et al 2005 Table 4: 9 genes whose mRNA levels down regulated significantly in lin-4 mutant
10   Copy Jul 18 07
HWiener et al 2005, Table 1
Progressive inbcrease of gene expression in daf-2 muntants on a 1, 6, and 10-day sample rate with 1 and 6-day controlls
59   Copy Feb 21 08
HWiener et al 2005, Table 3
Comparison of gene expression between 10-day old daf-2 muntants and 6-day old controll worms broken down by gene family and increase or decrease
67   Copy Feb 21 08
HWiener et al 2005, Table2
Comparison of gene expression of daf-2 and control worms on day 6, giveing genes grouped by gene family and increase or decrese
86   Copy Feb 21 08
HWiener et al 2005, Figure 2b
Heat Shock Protein like genes in daf-2 muntants and controll worms with ~60-fold increases in the muntants
6   Copy Feb 21 08
HWiener et al 2005, Table 1
Genes listed by their increase or decrease broken down by samples taken at 3 periods over 10 days, see table 1s for further data
58   Copy Feb 21 08
HWiener et al 2005, Table 2
Comparison of Gene expression between daf-2 and controll worms on day 6 broken down by gene family and increase or decrease
274   Copy Feb 21 08
HWienver et al 2005 ST1 Progressive increased exp
HWienver et al 2005 Supplement Table1: Progressive increase gene expression in daf-2 worm
31   Copy Jul 18 07
HWienver et al 2005 ST2 altered expression in daf
HWienver et al 2005 Supplement Table2: Comparison of gene expression between daf-2 and control worms on day 6
275   Copy Jul 19 07
HWienver et al 2005, ST4 dauer vs. mixed stage
HWienver et al 2005 Supplement Table4: Gene families with significant differential regulation in dauer versus mixed stage SAGE libraries
66   Copy Jul 19 07
HWienver et al 2005 ST4 Up in dauer vs. mixed sta
HWienver et al 2005 Supplement Table4: Gene families with significant differential regulation in dauer versus mixed stage SAGE libraries
28   Copy Jul 19 07
HWienver et al 2005 ST3 10 day daf-2 vs. 6 day co
HWienver et al 2005 Supplement Table3: Comparison of gene expression between 10-day old daf-2 and 6-day old control worms
140   Copy Jul 19 07
Jiang et al 2001 Fig4 Wnt signaling genes
Jiang et al 2001 Fig4 Wnt signaling genes
12   Copy Jun 9 06
Jiang et al 2001 Fig2 cyclin-genes
Jiang et al 2001 Fig2 7 cyclin-genes
7   Copy Jun 9 06
Jiang et al 2001 Fig3 Rb complex genes
Jiang et al 2001 Fig3 Rb tumor suppressor complex genes
9   Copy Jun 9 06
Jiang et al 2001 Fig1 male-enriched TF
Jiang et al 2001 Fig1 male-enriched Transcription factors
14   Copy Jun 9 06
Jiang et al 2001 Fig1 hermaphrodite-enriched TF
Jiang et al 2001 Fig1 hermaphrodite-enriched Transcriptional factors
23   Copy Jun 9 06
Jiang et al 2001 Fig1 male-enriched neuronal
Jiang et al 2001 Fig1 male-enriched neuronal genes
40   Copy Jun 9 06
Jiang et al 2001 Fig1 hermaphrodite-enriched neuro
Jiang et al 2001 Fig1 hermaphrodite-enriched neuronal
2   Copy Jun 9 06
Jones et al 2001 T3 20 most abundant Mixed-stage
Jones et al 2001 Table3: The Twenty Most Abundant Mixed-Stage-Specific SAGE Tags
20   Copy Jun 9 06
Jones et al 2001 Dauer specific genes P<0.05
Jones et al 2001 Dauer specific genes P<0.05
356   Copy Jun 9 06
Jones et al 2001 Non dauer genes P<0.05
Jones et al 2001 Non dauer genes P<0.05
530   Copy Jun 9 06
Jones et al 2001 T2 lifespan and Dauer
Jones et al 2001 Table2: Expression of Genes Implicated Previousl in Lifespan and Dauer
29   Copy Jun 9 06
Jones et al 2001 T3 20 most abundant Dauer
Jones et al 2001 Table 3: The Twenty Most Abundant Dauer SAGE Tags
20   Copy Jun 9 06
Kunitomo et al 2005, S2 motor neuron-expressed gen
Kunitomo et al 2005 Supplementary 2: 9 motor neuron-expressed genes
5   Copy Jul 18 07
Kunitomo et al 2005, S2 muscle neuron-expressed ge
Kunitomo et al 2005 Supplementary 2: 53 muscle neuron-expressed genes
43   Copy Jul 18 07
Kunitomo et al 2005, S2 genes with Xbox
Kunitomo et al 2005 Supplementary 2: 14 genes with one or more X-boxes in their promoter region. These genes are expected to be expressed in cilliated sensory neurons under the control of the DAF-19 transcription factor, are also enriched in the che-1::PABP RNA preparations.
14   Copy Jul 18 07
Kunitomo et al 2005, S2 intestine neuron-expressed
Kunitomo et al 2005 Supplementary 2: 64 intestine neuron-expressed genes
49   Copy Jul 18 07
Kunitomo et al 2005, S2 sensory neuron-expressed g
Kunitomo et al 2005 Supplementary 2: 20 sensory neuron-expressed genes
17   Copy Jul 18 07
Kunitomo et al 2005, Table 1 top neuron-expressed
Kunitomo et al 2005 Table 1: 24 top ranked neuron-expressed genes
23   Copy Jul 19 07
Kwon et al 2004 T1 Class1 rapid-induction Ethanol
Kwon et al 2004 Table1: Class1 rapid-induction Ethanol-response
7   Copy Jun 9 06
Kwon et al 2004 T1 late-repression Ethanol-respon
Kwon et al 2004 Table1: Class4 late-repression Ethanol-response
46   Copy Jun 9 06
Kwon et al 2004 T1 late-induction Ethanol-response
Kwon et al 2004 Table1: Class2 late-induction Ethanol-response
58   Copy Jun 9 06
Kwon et al 2004 T1 transient-induction Ethanol-res
Kwon et al 2004 Table1: Class3 transient-induction Ethanol-response
6   Copy Jun 9 06
Link et al 2003 T3 Abeta highly induced
Link et al 2003 Table3: Abeta highly induced
4   Copy Jun 9 06
Link et al 2003 T2 Abeta repressed
Link et al 2003 Table2: Abeta repressed
11   Copy Jun 9 06
Link et al 2003 T2 Abeta induced
Link et al 2003 Table2: Abeta induced
12   Copy Jun 9 06
Liu et al 2005, Regulated regulatory genes
Regulated regulatory genes. This table lists all transcription factors, signaling molecules, possible hormone biosynthetic enzymes, and other regulatory genes that are significantly regulated in our data.
243   Copy Oct 9 07
Liu et al 2005, Regulatory genes regulated by TGF
Regulatory genes regulated by TGF-beta signaling, grouped by gene family or pathway
50   Copy Oct 8 07
Liu et al 2005, Data comparison to other publicati
Comparison of microarray data in this paper to other published experiments
7   Copy Oct 8 07
Liu et al 2005, Strongly regulated genes
Strongly regulated genes ith a regulation greater than 2.145 fold
1236   Copy Oct 9 07
Liu et al 2005, Gene regulatory events under the c
A model for transcriptional regulatory events under the conrol of TGF-beta signaling suggested in this paper
14   Copy Oct 8 07
Liu et al 2005, Signal transduction pathways that
Signal transduction pathways, TFG-beta and Insulin, that regulate dauer formation
22   Copy Oct 8 07
Liu et al 2005, Genes regulated by TGF-beta
Dauer and aging genes regulated by TGF signaling grouped by gene family
18   Copy Oct 8 07
Liu et al 2005, Genes regulated by TGF-beta
Regulated regulatory genes regulated by TGF-beta
146   Copy Oct 8 07
Liu et al 2005, Regulatory genes regulated by TGF
Regulatory genes regulated by TGF-beta signaling, grouped by gene family or pathway, a complete list that was used to make table 4
276   Copy Oct 9 07
Lund et al 2002 Fig3C Germline-intrinsic
Lund et al 2002 Fig3C Germline-intrinsic
100   Copy Jun 9 06
Lund et al 2002 Fig3D Oocyte-en
Lund et al 2002 Fig3D Oocyte-enriched
99   Copy Jun 9 06
Lund et al 2002 Fig1 aging-regulated genes
Lund et al 2002 Fig1: maturity aging-regulated genes
163   Copy Jun 9 06
Lund et al 2002 Aging time course Fig3A muscle
Lund et al 2002 Fig3A muscle
44   Copy Jun 9 06
Lund et al 2002 Fig2A insulin-related
Lund et al 2002 Fig2A insulin-related genes
12   Copy Jun 9 06
Lund et al 2002 Fig2D mariner
Lund et al 2002 Fig2D mariner genes
39   Copy Jun 9 06
Lund et al 2002 Fig2B yeast SIR2 homologs
Lund et al 2002 Fig2B homomologs of yeast SIR2
4   Copy Jun 9 06
Lund et al 2002 Fig2D Tc3 genes
Lund et al 2002 Fig2D Tc3 genes
18   Copy Jun 9 06
Lund et al 2002 Aging time course Fig2C heatshock
Lund et al 2002 Aging time course Fig2C heatshock
26   Copy Jun 9 06
Lund et al 2002 Fig4 Mount 15
Lund et al 2002 Fig4 genes in Mount 15
97   Copy Jun 9 06
Lund et al 2002 Fig3B neuro-specific genes
Lund et al 2002 Fig3B neuro-specific genes
100   Copy Jun 9 06
McCarroll et al 2004 SFig5 conserved w/ yeast
McCarroll et al 2004 SFig5 conserved genes between worms and yeast
1615   Copy Jun 9 06
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph
McCarroll et al 2004 SFig1-4 conserved genes between worms andDrosophila
3849   Copy Jun 9 06
McElwee et al 2003 Fig4 daf-16 target lifspan
McElwee et al 2003 Fig4 daf-16 target lifspan genes
5   Copy Jun 9 06
McElwee et al 2003 T1 targets of daf-16
McElwee et al 2003 Table1: targets of daf-16
35   Copy Jun 9 06
McElwee et al 2004 ST2 Not up-regulated in daf-2
McElwee et al 2004 ST2 Expression of cytochrome P450 genes in daf-2 mutants and dauer larvae. Not up-regulated in daf-2 mutants or dauer larvae (41/77)
41   Copy Jul 18 07
McElwee et al 2004 ST2 Up in both daf-2 mt and da
McElwee et al 2004 ST2 Expression of cytochrome P450 genes in daf-2 mutants and dauer larvae. Up-regulated in both daf-2 mutants and dauer larvae (6/77)
6   Copy Jul 18 07
McElwee et al 2004 ST2 Up-regulated in daf-2 muta
McElwee et al 2004 ST2 Expression of cytochrome P450 genes in daf-2 mutants and dauer larvae. Up-regulated in daf-2 mutants alone (12/77)
12   Copy Jul 18 07
McElwee et al 2004 ST2 Up-regulated in dauer larv
McElwee et al 2004 ST2 Expression of cytochrome P450 genes in daf-2 mutants and dauer larvae. Up-regulated in dauer larvae alone (3/77)
3   Copy Jul 18 07
Menzel et al 2001 T3 CYP genes
Menzel et al 2001 Table3: 80 CYP genes
39   Copy Jun 9 06
Menzel et al 2007, PCB53-induced expression of GF
Menzel et al 2007 Figure 4: Expression of three different promoter::GFP transgenic lines with and without exposure to PCB52
3   Copy Aug 29 07
Menzel et al 2007, PCB53-induced expression of GF
Menzel et al 2007 Figure 4: Expression of three different promoter::GFP transgenic lines with and without exposure to PCB52
3   Copy Oct 8 07
Menzel et al 2007, Changes in fat storage with Ni
Menzel et al 2007 Figure 5b: Canges in the fat storage of non-starved young adults under PCB52 exposure with quanitative representation of Nile red stain
8   Copy Aug 29 07
Menzel et al 2007, PCB53-induced expression with
Menzel et al 2007 Figure 2c: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with esterase/lipase/thioesterase genes
12   Copy Oct 8 07
Menzel et al 2007, Changes in fat storage with Ni
Menzel et al 2007 Figure 5a: Canges in the fat storage of non-starved young adults under PCB52 exposure with Nile red stain showing fat localization
8   Copy Aug 29 07
Menzel et al 2007, PCB53-induced expression with
Menzel et al 2007 Figure 2a: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with CYP genes
13   Copy Aug 29 07
Menzel et al 2007, PCB53-induced expression with
Menzel et al 2007 Figure 2b: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with SDR genes
9   Copy Aug 29 07
Menzel et al 2007, Changes in fat storage with Ni
Menzel et al 2007 Figure 5b: Canges in the fat storage of non-starved young adults under PCB52 exposure with quanitative representation of Nile red stain
8   Copy Oct 8 07
Menzel et al 2007, PCB53-induced expression with
Menzel et al 2007 Figure 2c: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with esterase/lipase/thioesterase genes
12   Copy Aug 29 07
Menzel et al 2007, RNAi-dependant reproductive ca
Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of SRD genes
7   Copy Aug 29 07
Menzel et al 2007, RNAi-dependant reproductive ca
Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of SRD genes
7   Copy Oct 8 07
Menzel et al 2007, PCB53-induced expression with
Menzel et al 2007 Figure 2a: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with CYP genes
13   Copy Oct 8 07
Menzel et al 2007, RNAi-dependant reproductive ca
Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of lipase/esterase genes
10   Copy Oct 8 07
Menzel et al 2007, RNAi-dependant reproductive ca
Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of of CPY genes
13   Copy Oct 8 07
Menzel et al 2007, Changes in fat storage with Ni
Menzel et al 2007 Figure 5a: Canges in the fat storage of non-starved young adults under PCB52 exposure with Nile red stain showing fat localization
8   Copy Oct 8 07
Menzel et al 2007, RNAi-dependant reproductive ca
Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of of CPY genes
13   Copy Aug 29 07
Menzel et al 2007, PCB53-induced expression with
Menzel et al 2007 Figure 2b: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with SDR genes
9   Copy Oct 8 07
Menzel et al 2007, RNAi-dependant reproductive ca
Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of lipase/esterase genes
10   Copy Aug 29 07
Murphy et al 2003 Fig2 Class2 shorten lifespan
Murphy et al 2003 Fig2 Class2 shorten lifespan
246   Copy Jun 9 06
Murphy et al 2003 Fig2 Class1 elongate lifespan
Murphy et al 2003 Fig2 Class1 elongate lifespan
253   Copy Jun 9 06
PauliF et al 2006, ST9 intestine-expressed with GA
PauliF et al 2006, Sup. Table 9. 820 intestine-expressed genes with GATA DNA motifs in their promoters. http://elegans.bcgsc.ca/perl/eprofile/index
815   Copy Jul 19 07
PauliF et al 2006, ST8 germline enriched genes
PauliF et al 2006, Sup. Table 8. 1135 genes enriched in the germline. http://elegans.bcgsc.ca/perl/eprofile/index
1135   Copy Jul 19 07
PauliF et al 2006, ST6 intestine-enriched genes
PauliF et al 2006, Sup. Table 6. 624 genes enriched in the intestine. http://elegans.bcgsc.ca/perl/eprofile/index
624   Copy Jul 19 07
PauliF et al 2006, ST5 commonly expressed genes
PauliF et al 2006, Sup. Table 5. 510 genes commonly expressed in the intestine, muscle and germline. http://elegans.bcgsc.ca/perl/eprofile/index
510   Copy Jul 19 07
PauliF et al 2006, ST7 muscle enriched genes
PauliF et al 2006, Sup. Table 7. 230 genes enriched in the muscle. http://elegans.bcgsc.ca/perl/eprofile/index
231   Copy Jul 19 07
PauliF et al 2006, ST3 intestine-expressed genes
PauliF et al 2006, Sup. Table 3. 271 intestine-expressed genes with known anatomical expression pattern. http://elegans.bcgsc.ca/perl/eprofile/index
271   Copy Jul 19 07
Portman et al 2004 T1 10 previously-known ray gene
Portman et al 2004 Table1 10 previously-known ray genes
8   Copy Jun 9 06
Portman et al 2004 T1 newly found ray-genes in25c
Portman et al 2004 Table1: newlyfound ray-genes in 25 candidates
13   Copy Jun 9 06
Portman et al 2004 T1 25 candidate ray genes
Portman et al 2004 Table1 25 candidate ray genes
25   Copy Jun 9 06
PWang et al 2005, Supplimental Table 1
Wang et al 2005 Supplemental Table 1: Up-regulated genes upon overexpression of both CeTwist and CeE/DA in microarray.
159   Copy Jul 18 07
PWang et al 2005, Supplimental Table 3
Wang et al 2005 Supplemental Table 3: 11 genes showed expression in a subset of cells where CeTwist is expressed. They were defined as candidate target genes of CeTwist and CeE/DA.
11   Copy Jul 18 07
PWang et al 2005, Supplimental Table 1
Wang et al 2005 Supplemental Table 2: Down-regulated genes upon overexpression of both CeTwist and CeE/DA in microarray.
34   Copy Jul 19 07
ReichertK et al 2005 T2 xenobiotic induced C-type
ReichertK et al 2005 Table2: xenobiotic induced C-type-lectins
6   Copy Jun 9 06
ReichertK et al 2005 T1
ReichertK et al 2005 Table1: xenobiotic induced Carboxylesterases
3   Copy Jun 9 06
ReichertK et al 2005 T2 xenobiotic induced Collag
ReichertK et al 2005 Table2: xenobiotic induced Collagene
23   Copy Jun 9 06
ReichertK et al 2005 T1 xenobiotic induced UDP-gl
ReichertK et al 2005 Table1: xenobiotic induced UDP-glucoronosyltransferases
3   Copy Jun 9 06
ReichertK et al 2005 T1 xenobiotic induced P450
ReichertK et al 2005 Table1: xenobiotic induced P450-b5
10   Copy Jun 9 06
ReichertK et al 2005 T3 xenobiotic downregulated
ReichertK et al 2005 Table3: 153 xenobiotic downregulated
43   Copy Jun 9 06
ReichertK et al 2005 T1 xenobiotic induced GSTs
ReichertK et al 2005 Table1: xenobiotic induced GSTs
4   Copy Jun 9 06
Reinke et al 2000, germline intrinsic genes
Reinke et al 2004, Fig6 Germline Instrinsic genes
7   Copy Jul 19 07
Reinke et al 2000, oocyte enriched genes
Reinke et al 2004, Fig5 oocyte enriched genes
8   Copy Jul 18 07
Reinke et al 2004, GO categories
Reinke et al 2004, Fig3 GO categories
1388   Copy Jul 24 06
Reinke et al 2004, mixed sperm soma
Reinke et al 2004, Fig2a mixed sperm soma
478   Copy Jul 24 06
Reinke et al 2004, fem3 enriched genes
Reinke et al 2004, Fig1 Vb fem3 enriched genes
1343   Copy Jul 24 06
Reinke et al 2004, spermatogenesis enriched genes
Reinke et al 2004, Fig2a spermatogenesis enriched genes
865   Copy Jul 24 06
Reinke et al 2004, male germline
Reinke et al 2004, Fig2b male germline
31   Copy Jul 24 06
Reinke et al 2004, wt herm vs wt male enriched gen
Reinke et al 2004, Fig1 IIIa wt herm vs wt male enriched genes
1935   Copy Jul 24 06
Reinke et al 2004, oogenesis enriched genes
Reinke et al 2004, Fig2a oogenesis enriched genes
1030   Copy Jul 24 06
Reinke et al 2004, list of genes in cluster C
Reinke et al 2004, Fig5 list of genes in cluster C
861   Copy Jul 24 06
Reinke et al 2004, list of genes in cluster E
Reinke et al 2004, Fig5 list of genes in cluster E
1170   Copy Jul 24 06
Reinke et al 2004, list of genes in cluster F
Reinke et al 2004, Fig5 list of genes in cluster F
715   Copy Jul 24 06
Reinke et al 2004, wt vs glp-4 enriched genes
Reinke et al 2004, Fig1 I wt vs glp-4 enriched genes
3143   Copy Jul 24 06
Reinke et al 2004, list of genes in cluster D
Reinke et al 2004, Fig5 list of genes in cluster D
715   Copy Jul 24 06
Reinke et al 2004, fem-1 enriched genes
Reinke et al 2004, Fig1 Va fem-1 enriched genes
1650   Copy May 15 07
Reinke et al 2004, wt males vs glp4 male enriched
Reinke et al 2004, Fig1 II wt males vs glp4 male enriched genes
1092   Copy Jul 24 06
Reinke et al 2004, list of genes in cluster order
Reinke et al 2004, Fig5 list of genes in cluster order
5070   Copy Jul 24 06
Reinke et al 2004, mixed oogenesis soma
Reinke et al 2004, Fig2a mixed oogenesis soma
620   Copy Jul 24 06
Reinke et al 2004, herm soma enriched genes
Reinke et al 2004, Fig1 IVa herm soma enriched genes
460   Copy Jul 24 06
Reinke et al 2004, wt herm vs wt herm enriched gen
Reinke et al 2004, Fig1 IIIb wt male vs wt herm enriched genes
1269   Copy Jul 24 06
Reinke et al 2004, intrinsic
Reinke et al 2004, Fig2a intrinsic
1248   Copy Jul 24 06
Reinke et al 2004, Fig2b shared gemlines
Reinke et al 2004, Fig2b shared gemlines
253   Copy Jul 24 06
Reinke et al 2004, herm sperm
Reinke et al 2004, Fig2b herm sperm
162   Copy Jul 24 06
Reinke et al 2004, male sperm
Reinke et al 2004, Fig2b male sperm
105   Copy Jul 24 06
Reinke et al 2004, shared sperm
Reinke et al 2004, Fig2b shared sperm
703   Copy Jul 24 06
Reinke et al 2004, IVb male soma enriched genes
Reinke et al 2004, Fig1 IVb male soma enriched genes
433   Copy Jul 24 06
Reinke et al 2004, list of genes in cluster A
Reinke et al 2004, Fig5 list of genes in cluster A
606   Copy Jul 24 06
Reinke et al 2004, list of genes in cluster B
Reinke et al 2004, Fig5 list of genes in cluster B
736   Copy Jul 24 06
Robertson et al 2005, Fig3A newly expressed in 12-
Robertson et al 2005 Fig 3A: 3 genes that are newly expressed in 8- to 12-cell stage.
3   Copy Jul 18 07
Robertson et al 2005, Fig3B zygotic genes
Robertson et al 2005 Fig 3B: 7 zygotic genes that are expressed only zygotically in early embryos. They are elevated in expression at the 12-cell stage versus the 4-cell stage.
7   Copy Jul 19 07
Robertson et al 2005, Fig4 skin-1 dependent genes
Robertson et al 2005 Fig 4: 50 genes that are zygotically expressed (up-regulated in 12-cell embryos versus 4-cell embryos) and whose expression is down-regulated in skn-1 samples (12-cell embryos versus 4-cell embryos) at least threefold in all three arrays.
50   Copy Jul 18 07
Robertson et al 2005, Fig3B maternel genes
Robertson et al 2005 Fig 3B: 16 maternal genes that are maternally supplied and either maintained at a high level in early embryos(Type I) or degraded in somatic blastomeres but maintained in the germline lineage in early embryos(Type II). Type II maternal genes is downregulated in 12-cell-stage compared to 4-cell-stage. Type I basically remain unchanged.
16   Copy Jul 19 07
Romagnolo et al 2002 Fig3b Adhesion
Romagnolo et al 2002 Fig3b 16 Adhesion
16   Copy Jun 9 06
Romagnolo et al 2002 Fig3b TF
Romagnolo et al 2002 Fig3b 28 Transcripton Factors
28   Copy Jun 9 06
Romagnolo et al 2002 Fig3b secretion
Romagnolo et al 2002 Fig3b 6 secretion
6   Copy Jun 9 06
Romagnolo et al 2002 Fig3b Proteases
Romagnolo et al 2002 Fig3b 20 Proteases
20   Copy Jun 9 06
Romagnolo et al 2002 Fig3b Unkown
Romagnolo et al 2002 Fig3b Unkown
411   Copy Jun 9 06
Romagnolo et al 2002 Fig3b Detoxification
Romagnolo et al 2002 Fig3b 6 Detoxification
6   Copy Jun 9 06
Romagnolo et al 2002 Fig3b Metabolism
Romagnolo et al 2002 Fig3b 40 Metabolism
40   Copy Jun 9 06
Romagnolo et al 2002 Fig3b Cell Structure
Romagnolo et al 2002 Fig3b 10 Cell Structure
10   Copy Jun 9 06
Romagnolo et al 2002 Fig2a heat shock
Romagnolo et al 2002 Fig2a 29 heat shock
29   Copy Jun 9 06
Romagnolo et al 2002 Fig3b others
Romagnolo et al 2002 Fig3b 31 others
31   Copy Jun 9 06
Romagnolo et al 2002 Fig3b Oxidation
Romagnolo et al 2002 Fig3b Oxidation genes
13   Copy Jun 9 06
Romagnolo et al 2002 Fig5 genes in let-60 timecour
Romagnolo et al 2002 Fig5 34 genes in let-60 timecourse
34   Copy Jun 9 06
Romagnolo et al 2002 Fig3b signaling
Romagnolo et al 2002 Fig3b 82 signaling
82   Copy Jun 9 06
Romagnolo et al 2002 Fig3b Protein Synthesis
Romagnolo et al 2002 Fig3b 19 Protein Synthesis
19   Copy Jun 9 06
Romagnolo et al 2002 Fig3b Transporters
Romagnolo et al 2002 Fig3b 26 Transporters
26   Copy Jun 9 06
Roy et al 2002 S2 positivecontrol L1 muscle
Roy et al 2002 Supplement2: positivecontrol L1 muscle
18   Copy Jun 9 06
Roy et al 2002 S3 muscle genes
Roy et al 2002 Supplement3: muscle genes
31   Copy Jun 9 06
Shapira et al 2006, elt-2 knockdown affects the ex
elt-2 knockdown selectively affects the expression of infection responce genes, looking at intestine function and structural genes as well as cadmium exposure
10   Copy Oct 8 07
Shapira et al 2006, Infection responce list
List of genes induced and repressed along with gut or muscle enrichment and responce to cadmium
229   Copy Oct 8 07
Shen et al 2005 T2 hif-1indepen hypoxia
Shen et al 2005 T2 47 hif-1 indepenent hypoxia
47   Copy Oct 30 07
Shen et al 2005 T1 hif-1 depend hypoxia
Shen et al 2005 T1 63 hif-1 dependent hypoxia
63   Copy Jun 9 06
Steina et al 2007, Neural genes conatining the N1-
Candidate neural genes containing predicted pan-neural motif ("N1-box") (Ruvinsky et al 2006) that are detected in the Larval and/or Embryonic Pan-neural Enriched datasets
82   Copy Oct 9 07
Steina et al 2007, Categorized larval pan-neural g
Categorized larval pan-neural enriched genes with known expression patterns
168   Copy Oct 8 07
Steina et al 2007, Embryonic A-class and AFD/AWB e
Genes detected in both the Embryonic A-class enriched dataset and the AFD/AWB enriched dataset (Colosimo et al 2004)
139   Copy Oct 9 07
Steina et al 2007, Embryonic A-class enriched gene
Genes detected in the Embryonic A-class enriched dataset but not the Embryonic Pan neural enriched dataset
474   Copy Oct 8 07
Steina et al 2007, Uncharacterized enriched genes
Genes encoding Uncharacterized Conserved Proteins (with human homologs) that are enriched in both the embryonic and larval pan-neural datasets
27   Copy Oct 9 07
Steina et al 2007, genes in germline, muscle, and
Genes commonly enriched in the Germline, Muscle, or Intestine (GMI) dataset (based on Pauli et al, Development, 2006) and larval A-class enriched dataset
30   Copy Oct 9 07
Steina et al 2007, Dauer genes in pan-neural datas
Dauer genes are highly represented in the Pan neural datasets with a majority of dauer pathway genes being enriched
27   Copy Oct 9 07
Steina et al 2007, Genes enriched in both Embryoni
Genes enriched in both Embryonic and Larval A-class neurons classified and grouped by category
162   Copy Oct 9 07
Steina et al 2007, Muscle enriched genes
the 50 top ranked muscle-enriched genes
50   Copy Oct 9 07
Steina et al 2007, Enriched uncharacterized human
108 unique transcripts from all enriched datasets (EP, LP, EA, LA) that have uncharacterized human homologs
108   Copy Oct 9 07
Stetina et al 2007, Transcripts encoding proteins
Transcripts encoding proteins that function in synaptic transmission are enriched in the neural datasets but largely excluded from muscle
60   Copy Oct 9 07
Stetina et al 2007, Homebox receptors
Major transcription factor families enriched in C. elegans neurons Homebox receptor group
32   Copy Oct 8 07
Stetina et al 2007, Genes enriched in pan-neural d
representative genes enriched in the larval pan-neural dataset expressed in the listed neuron
8   Copy Aug 29 07
Stetina et al 2007, Larval pan-neural compared to
Larval pan-neural hybridization compared to average reference intensities to identify differentially expressed transcripts Red are increased and green are depressed
6   Copy Aug 29 07
Stetina et al 2007, Aryl-hyrocarbon receptors
Major transcription factor families enriched in C. elegans neurons Aryl-hyrocarbon receptor group
3   Copy Oct 8 07
Stetina et al 2007, differentially expressed trans
single larval A-class hybridization compared to reference intensities identifing enriched and depressed transcripts
6   Copy Oct 8 07
Stetina et al 2007, Homebox receptors
Major transcription factor families enriched in C. elegans neurons Homebox receptor group
32   Copy Aug 29 07
Stetina et al 2007, Transcripts encoding proteins
Transcripts encoding proteins that function in synaptic transmission are enriched in the neural datasets but largely excluded from muscle
60   Copy Aug 30 07
Stetina et al 2007, differentially expression in A
Differential expression of axon guidance cues and receptors in A-class motor neurons graphic
6   Copy Aug 29 07
Stetina et al 2007, dauer pathway genes
dauer pathway genes are enriched in either the larval pan-neural or embryonic pan-neural datasets
26   Copy Oct 8 07
Stetina et al 2007, Differences in pan-neural and
Genes expressed in mechanosensory neurons are differentially detected in the larval pan-neural dataset versus the larval A-class dataset, This data shows the difference in the expression of these genes
9   Copy Oct 8 07
Stetina et al 2007, HLH receptors
Major transcription factor families enriched in C. elegans neurons Helix-Loop-Helix receptor group
5   Copy Oct 8 07
Stetina et al 2007, Profile of Ion channel/recepto
Microarray profiles detect known C. elegans neural genes with a list of Ion Channel/receptor/Membrane Proteins as an example
20   Copy Oct 8 07
Stetina et al 2007, HMG box receptors
Major transcription factor families enriched in C. elegans neurons High Mobility Group box receptor group
7   Copy Aug 29 07
Stetina et al 2007, dauer pathway genes
dauer pathway genes are enriched in either the larval pan-neural or embryonic pan-neural datasets
26   Copy Aug 29 07
Stetina et al 2007, differentially expression in A
Differential expression of axon guidance cues and receptors in A-class motor neurons graphic
6   Copy Oct 8 07
Stetina et al 2007, Expression of promoter-GFP re
Expression of promoter-GFP reporters in the embryonic and larval pan-nueral and A-class motor nuerons
31   Copy Aug 29 07
Stetina et al 2007, SMAD receptors
Major transcription factor families enriched in C. elegans neurons SMAD receptor group
3   Copy Aug 29 07
Stetina et al 2007, GFP reporters validate dataset
GFP reporters for representitive genes from the neuron-enriched datasets showing the veracity for the neuronal microarray datasets
6   Copy Oct 8 07
Stetina et al 2007, Genes enriched in pan-neural d
representative genes enriched in the larval pan-neural dataset expressed in the listed neuron
8   Copy Oct 8 07
Stetina et al 2007, Profile of Ion channel/recepto
Microarray profiles detect known C. elegans neural genes with a list of Ion Channel/receptor/Membrane Proteins as an example
20   Copy Aug 29 07
Stetina et al 2007, Interactome map of pan-neural
A comparison to transcripts enriched in both embryonic pan-neural and larval pan-neural datasets revealed a single large interaction cluster
53   Copy Oct 9 07
Stetina et al 2007, GFP reporters validate dataset
GFP reporters for representitive genes from the neuron-enriched datasets showing the veracity for the neuronal microarray datasets
6   Copy Aug 29 07
Stetina et al 2007, Hormone receptors
Major transcription factor families enriched in C. elegans neurons Hormone receptor group
37   Copy Oct 8 07
Stetina et al 2007, SMAD receptors
Major transcription factor families enriched in C. elegans neurons SMAD receptor group
3   Copy Oct 8 07
Stetina et al 2007, Interactome map of pan-neural
A comparison to transcripts enriched in both embryonic pan-neural and larval pan-neural datasets revealed a single large interaction cluster
53   Copy Aug 30 07
Stetina et al 2007, Aryl-hyrocarbon receptors
Major transcription factor families enriched in C. elegans neurons Aryl-hyrocarbon receptor group
3   Copy Aug 29 07
Stetina et al 2007, Hormone receptors
Major transcription factor families enriched in C. elegans neurons Hormone receptor group
37   Copy Aug 29 07
Stetina et al 2007, Expression of promoter-GFP re
Expression of promoter-GFP reporters in the embryonic and larval pan-nueral and A-class motor nuerons
31   Copy Oct 8 07
Stetina et al 2007, Differences in pan-neural and
Genes expressed in mechanosensory neurons are differentially detected in the larval pan-neural dataset versus the larval A-class dataset, This data shows the difference in the expression of these genes
9   Copy Aug 29 07
Stetina et al 2007, HMG box receptors
Major transcription factor families enriched in C. elegans neurons High Mobility Group box receptor group
7   Copy Oct 8 07
Stetina et al 2007, Larval pan-neural compared to
Larval pan-neural hybridization compared to average reference intensities to identify differentially expressed transcripts Red are increased and green are depressed
6   Copy Oct 8 07
Stetina et al 2007, HLH receptors
Major transcription factor families enriched in C. elegans neurons Helix-Loop-Helix receptor group
5   Copy Aug 29 07
Stetina et al 2007, differentially expressed trans
single larval A-class hybridization compared to reference intensities identifing enriched and depressed transcripts
6   Copy Aug 29 07
Szewczyk et al 2005, Table4 up-regulated in diet
Szewczyk2006 et al 2006 Table 4: 24 genes that are upregulated in CeMM(Chemical defined minium medium) versus NGM(nematode growth medium)
21   Copy Jul 18 07
Szewczyk et al 2005, Table4 down-regulated in diet
Szewczyk2006 et al 2006 Table 4: 26 genes that are downregulated in CeMM(Chemical defined minium medium) versus NGM(nematode growth medium)
26   Copy Jul 18 07
Thoemke et al 2005, GFP reporter expression for ge
GFP reporter expression for genes with L4 male-enriched somatic expression, showing somatic gonad and sexually dimorphic tail structures
7   Copy Oct 8 07
Thoemke et al 2005, hemaphrodite microaray result
Hermaphrodite-enriched somatic genes with in situ pattern in database
12   Copy Oct 8 07
Thoemke et al 2005, Male microarray results
Male microarray results showing genes know to be enriched that both were and were not shown to be enriched in this publication as well as Male-enriched somatic genes tested for sex-enriched expression by GFP reporter analysis
28   Copy Oct 8 07
Thoemke et al 2005, Table 1
genes with sex-enriched expression
199   Copy Feb 21 08
ViswanathanM et al 2005 Fig6A Resveratrol
ViswanathanM et al 2005 Fig6A Resveratrol
13   Copy Jun 9 06
ViswanathanM et al 2005 S2 UPR genes
ViswanathanM et al 2005 Supplement table: UPR Pathway Genes are not Substantially Induced by Resveratrol
7   Copy Jun 9 06
ViswanathanM et al 2005 S2 daf-16 Resveratrol
ViswanathanM et al 2005 Supplement Table: Genes Found by Microrray to be Regulated by Resveratrol Treatment in daf-16 Worms (p<0.01)
3392   Copy Jun 9 06
ViswanathanM et al 2005 T1 pqn genes
ViswanathanM et al 2005 Table 1: C. elegans pqn-Related Genes Regulated by Resveratrol Treatment and SIR-2.1 Overexpression.PQN and ABU proteins are members of a prion-like glutamine/ asparagine-rich protein family. These genes were induced in WT by resveratrol,were induced even more in daf-16 by Resveratrol, were repressed in Sir-2.1 overexpressor
19   Copy Jul 18 07
ViswanathanM et al 2005 T1 pqn genes
ViswanathanM et al 2005 Table1: Table 1. C. elegans pqn-Related Genes Regulated by Resveratrol Treatment and SIR-2.1 Overexpression
19   Copy Jun 9 06
ViswanathanM et al 2005 Fig6A Ethanol HS
ViswanathanM et al 2005 Fig6A Ethanol Heat Shock
7   Copy Jun 9 06
ViswanathanM et al 2005 Fig6A Ethanol Paraquat
ViswanathanM et al 2005 Fig6A Ethanol Paraquat
3   Copy Jun 9 06
ViswanathanM et al 2005 S2 Resveratrol regulate WT
ViswanathanM et al 2005 Supplement table: Genes Found by Microrray to be Regulated by Resveratrol Treatment in Wild-type N2 worms (p<0.01)
123   Copy Jun 9 06
ViswanathanM et al 2005 S2 sir-2.1 regulated
ViswanathanM et al 2005 Supplement table: Genes Found by Microrray to be Regulated by Low-Copy Overexpression of SIR-2.1 (p<0.014)
9048   Copy Jun 9 06
Wang et al 2003 Fig3 Dauer Enriched
Wang et al 2003 Fig3: All Dauer Enriched genes
540   Copy Jul 19 07
Wang et al 2003 S4 Climbing
Wang et al 2003 Supplement4: List of Climbing genes
386   Copy Jun 9 06
Wang et al 2003 Fig3 TransientList
Wang et al 2003 Supplement4: List of Transient genes.we divided the dauer exit-specific genes into five groups: dauer-enriched, transient, early, climbing and late (Fig. 3). The expression of the genes in the dauer-enriched (540 genes) group decline in the dauer exit timecourse, showing either immediate or delayed kinetics. These genes are presumably involved in dauer-specific processes, such as stress resistance or prolonged life. Four groups of genes are induced as the dauer recovers: transient (195 genes, induced earliest and transiently), early (538 genes, induced to a steady state level), climbing (386 genes, induced and increasing continually) and late (325 genes, induced late) (Fig. 3).
195   Copy Jul 19 07
Wang et al 2003 Fig3 LateList
Wang et al 2003 Supplement4: List of Late genes. we divided the dauer exit-specific genes into five groups: dauer-enriched, transient, early, climbing and late (Fig. 3). The expression of the genes in the dauer-enriched (540 genes) group decline in the dauer exit timecourse, showing either immediate or delayed kinetics. These genes are presumably involved in dauer-specific processes, such as stress resistance or prolonged life. Four groups of genes are induced as the dauer recovers: transient (195 genes, induced earliest and transiently), early (538 genes, induced to a steady state level), climbing (386 genes, induced and increasing continually) and late (325 genes, induced late) (Fig. 3).
325   Copy Jul 19 07
Wang et al 2003 Fig7 daf-16
Wang et al 2003 3 Fig7 daf-16 isoforms
3   Copy Jun 9 06
Wang et al 2003 Fig3 Climbing
Wang et al 2003 Supplement4: List of Climbing genes. we divided the dauer exit-specific genes into five groups: dauer-enriched, transient, early, climbing and late (Fig. 3). The expression of the genes in the dauer-enriched (540 genes) group decline in the dauer exit timecourse, showing either immediate or delayed kinetics. These genes are presumably involved in dauer-specific processes, such as stress resistance or prolonged life. Four groups of genes are induced as the dauer recovers: transient (195 genes, induced earliest and transiently), early (538 genes, induced to a steady state level), climbing (386 genes, induced and increasing continually) and late (325 genes, induced late) (Fig. 3).
386   Copy Jul 19 07
Wang et al 2003 S4 LateList
Wang et al 2003 Supplement4: List of Late genes
325   Copy Jun 9 06
Wang et al 2003 S5-Fig1 genes common to feeding A
Wang et al 2003 S5/Fig1: 446 genes common to feeding two-way ANOVA P<0.05. Hierarchical clustering was used to display the ratio of dauer to L1 at 0 hours (D/L1) and the expression ratios of the 446 commonly regulated genes during the dauer exit and L1 starvation timecourses.
446   Copy Jul 19 07
Wang et al 2003 S7 SAGE genes in the dataset
Wang et al 2003 Supplement7: 305 SAGE genes in the dataset lists
305   Copy Jun 9 06
Wang et al 2003 S5 genes common to feeding ANOVA
Wang et al 2003 Supplement5: 446 genes common to feeding two-way ANOVA P<0.05
446   Copy Jun 9 06
Wang et al 2003 S8 SAGE genes in the dauer exit
Wang et al 2003 Supplement8: 305 SAGE genes in the dauer exit time course
361   Copy Jun 9 06
Wang et al 2003 Fig3 Early genes
Wang et al 2003 Supplement4: List of Early genes. we divided the dauer exit-specific genes into five groups: dauer-enriched, transient, early, climbing and late (Fig. 3). The expression of the genes in the dauer-enriched (540 genes) group decline in the dauer exit timecourse, showing either immediate or delayed kinetics. These genes are presumably involved in dauer-specific processes, such as stress resistance or prolonged life. Four groups of genes are induced as the dauer recovers: transient (195 genes, induced earliest and transiently), early (538 genes, induced to a steady state level), climbing (386 genes, induced and increasing continually) and late (325 genes, induced late) (Fig. 3).
538   Copy Jul 19 07
Wang et al 2003 S3 genes pass one-way ANOVA
Wang et al 2003 Supplement3: 2430 genes pass one-way ANOVA P<0.001
2430   Copy Jun 9 06
Wang et al 2003 S6 removed genes of contamination
Wang et al 2003 Supplement6: 220 genes removed because of contamination
220   Copy Jun 9 06
Wang et al 2003 S4 Dauer Enriched
Wang et al 2003 Supplement4: Dauer Enriched
540   Copy Jun 9 06
Wang et al 2003 S4 Early genes
Wang et al 2003 Supplement4: List of Early genes
538   Copy Jun 9 06
Wang et al 2003 S4 TransientList
Wang et al 2003 Supplement4: List of Transient genes
195   Copy Jun 9 06
Wang et al 2003 S4 genes pass two-wayANOVA P0
Wang et al 2003 Supplement4: genes pass two-way ANOVA P<0.05
1984   Copy Jun 9 06
Welker et al 2007, Transcripts common to all three
Transcripts common to all three muntant datasets including fold increase and decrease as well as description
22   Copy Aug 29 07
Welker et al 2007, pathogen responce and longevity
Comparison of RNAi muntants rde-1 and rde-4 to a N2 wildtype when fed S. marcescens or a nonpathogenic OP50
2   Copy Oct 8 07
Welker et al 2007, let-7 targets
let-7 targets from dcr-1 muntant microarray
12   Copy Oct 8 07
Welker et al 2007, Percentage datasets predicted t
Percentage of genes in datasets that are predicte to be targets for miRNA, each dataset is a mutant of the particular gene
3   Copy Oct 8 07
Welker et al 2007, let-7 targets
let-7 targets from dcr-1 muntant microarray
12   Copy Aug 29 07
Welker et al 2007, Analysis of drc-1 rde-1 rde-4 m
Summary of microarray analysis showing silencing by small RNAs, fold change in selected genes, and overlap of misregulated genes between each of the three muntants
10   Copy Oct 8 07
Welker et al 2007, Chromosomal distrobution of mis
Chromosomal distrobution of misregulated genes from the RNAi muntants of dcr-1, rde-1, and rde-4
3   Copy Aug 29 07
Welker et al 2007, Overlap of RNAi and stressor ex
Microarray data sets of RNAi mutants overlap with those exposed to pathogen or toxin
3   Copy Aug 29 07
Welker et al 2007, Transcripts common to all three
Transcripts common to all three muntant datasets including fold increase and decrease as well as description
22   Copy Oct 8 07
Welker et al 2007, Percentage datasets predicted t
Percentage of genes in datasets that are predicte to be targets for miRNA, each dataset is a mutant of the particular gene
3   Copy Aug 29 07
Welker et al 2007, Analysis of drc-1 rde-1 rd
Summary of microarray analysis showing silencing by small RNAs, fold change in selected genes, and overlap of misregulated genes between each of the three muntants
11   Copy Sep 4 07
Welker et al 2007, rde-1 and rde-4 raw data
GeneSifter output for rde-1 and rde-4 mutant datasets analysis for misregulated genes- (P<0.05 multi-sample t-test)
412   Copy Oct 8 07
Welker et al 2007, Overrepresented terms in gene o
Significant gene ontologies (GO) for molecular function (MF), biological process (BP), and cellular component (CC) are shown for the overrepresented terms of each of the three muntants
3   Copy Oct 8 07
Welker et al 2007, Overlap of RNAi and stressor ex
Microarray data sets of RNAi mutants overlap with those exposed to pathogen or toxin
3   Copy Oct 8 07
Welker et al 2007, pathogen responce and longevity
Comparison of RNAi muntants rde-1 and rde-4 to a N2 wildtype when fed S. marcescens or a nonpathogenic OP50
2   Copy Aug 29 07
Welker et al 2007, Chromosomal distrobution of mis
Chromosomal distrobution of misregulated genes from the RNAi muntants of dcr-1, rde-1, and rde-4
3   Copy Oct 8 07
Welker et al 2007, Overrepresented terms in gene o
Significant gene ontologies (GO) for molecular function (MF), biological process (BP), and cellular component (CC) are shown for the overrepresented terms of each of the three muntants
3   Copy Aug 29 07
Wiener et al 2005, Gene expression between 10-day
Comparison of gene expression between 10-day old daf-2 and 6-day old control worms broken daown by gene family and fold increase or decrease
139   Copy Oct 9 07
Wiener et al 2005, Gene families with significant
Gene families with significant differential regulation in dauer versus mixed stage SAGE libraries broken doen by gene family and fold increase or decrease
65   Copy Oct 8 07
Zhang et al 2002, T1 mec-3 dependent genes
Zhang et al 2002 T1 mec-3 depedent genes
38   Copy Jun 9 06
Zhang et al. 2002, Fig2b overexpressed in mec-3MT
Zhang et al 2002 Fig2b 25 genes overexpressed in mec-3MT
25   Copy Jun 9 06