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Gene list	Number of genes	Copy gene list	Date
Baugh et al 2003, class SE Baugh et al 2005, Supplymental Dataset, class SE	973	Copy	Jul 24 06
Baugh et al 2003, class MET Baugh et al 2005, Supplymental Dataset, class MET	915	Copy	Jul 24 06
Baugh et al 2003, subclass MDpd_PC32 Baugh et al 2005, Supplymental Dataset, subclass MDpd_PC32	155	Copy	Jul 24 06
Baugh et al 2003, subclass SE_143min Baugh et al 2005, Supplymental Dataset, subclass SE_143min	67	Copy	Jul 24 06
Baugh et al 2003, class E Baugh et al 2005, Supplymental Dataset, class E	3678	Copy	Jul 24 06
Baugh et al 2003, subclass SE_101min Baugh et al 2005, Supplymental Dataset, subclass SE_101min	97	Copy	Jul 24 06
Baugh et al 2003, subclass E_83min Baugh et al 2005, Supplymental Dataset, subclass E_425min	425	Copy	Jul 24 06
Baugh et al 2003, subclass ETmax_101min Baugh et al 2005, Supplymental Dataset, subclass ETmax_23min	69	Copy	Jul 24 06
Baugh et al 2003, subclass E_23min Baugh et al 2005, Supplymental Dataset, subclass E_23min	925	Copy	Jul 24 06
Baugh et al 2003, class SET Baugh et al 2005, Supplymental Dataset, class SET	441	Copy	Jul 24 06
Baugh et al 2003, subclass SE_PC32 Baugh et al 2005, Supplymental Dataset, subclass SE_PC32	8	Copy	Jul 24 06
Baugh et al 2003, subclass SE_122min Baugh et al 2005, Supplymental Dataset, subclass SE_93min	93	Copy	Jul 24 06
Baugh et al 2003, class SMD Baugh et al 2005, Supplymental Dataset, class SMD	953	Copy	Jul 24 06
Baugh et al 2003, subclass SE_53min Baugh et al 2005, Supplymental Dataset, subclass SE_53min	342	Copy	Jul 24 06
Baugh et al 2003, subclass MDpd_41min Baugh et al 2005, Supplymental Dataset, subclass MDpd_41min	367	Copy	Jul 24 06
Baugh et al 2003, subclass E_66min Baugh et al 2005, Supplymental Dataset, subclass E_66min	284	Copy	Jul 24 06
Baugh et al 2003, subclass SE_186min Baugh et al 2005, Supplymental Dataset, subclass SE_186min	53	Copy	Jul 24 06
Baugh et al 2003, subclass SE_66min Baugh et al 2005, Supplymental Dataset, subclass SE_66min	55	Copy	Jul 24 06
Baugh et al 2003, subclass MDpd_53min Baugh et al 2005, Supplymental Dataset, subclass MDpd_53min	733	Copy	Jul 24 06
Baugh et al 2003, subclass SE_41min Baugh et al 2005, Supplymental Dataset, subclass SE_41min	61	Copy	Jul 24 06
Baugh et al 2003, subclass SE_23min Baugh et al 2005, Supplymental Dataset, subclass SE_23min	170	Copy	Jul 24 06
Baugh et al 2003, subclass E_101min Baugh et al 2005, Supplymental Dataset, subclass E_101min	335	Copy	Jul 24 06
Baugh et al 2003, class SM Baugh et al 2005, Supplymental Dataset, class SM	3357	Copy	Jul 24 06
Baugh et al 2003, subclass ETmax_101min Baugh et al 2005, Supplymental Dataset, subclass ETmax_101min	216	Copy	Jul 24 06
Baugh et al 2003, subclass E_143min Baugh et al 2005, Supplymental Dataset, subclass E_143min	229	Copy	Jul 24 06
Baugh et al 2003, class MDE Baugh et al 2005, Supplymental Dataset, class MDE	643	Copy	Jul 24 06
Baugh et al 2003, subclass E_53min Baugh et al 2005, Supplymental Dataset, subclass E_53min	888	Copy	Jul 24 06
Baugh et al 2003, subclass E_41min Baugh et al 2005, Supplymental Dataset, subclass E_41min	361	Copy	Jul 24 06
Baugh et al 2003, subclass ETmax_53min Baugh et al 2005, Supplymental Dataset, subclass ETmax_53min	245	Copy	Sep 4 07
Baugh et al 2003, subclass SE_83min Baugh et al 2005, Supplymental Dataset, subclass SE_83min	123	Copy	Jul 24 06
Baugh et al 2003, subclass E_143min Baugh et al 2005, Supplymental Dataset, subclass E_186min	277	Copy	Jul 24 06
Baugh et al 2003, subclass ETmax_41min Baugh et al 2005, Supplymental Dataset, subclass ETmax_41min	59	Copy	Jul 24 06
Baugh et al 2003, class ET Baugh et al 2005, Supplymental Dataset, class ET	1356	Copy	Jul 24 06
Baugh et al 2003, subclass E_PC32 Baugh et al 2005, Supplymental Dataset, subclass E_31min	31	Copy	Jul 24 06
Baugh et al 2003, subclass MD_23min Baugh et al 2005, Supplymental Dataset, subclass MD_23min	551	Copy	Jul 24 06
Baugh et al 2003, class MDET Baugh et al 2005, Supplymental Dataset, class MDET	44	Copy	Jul 24 06
Baugh et al 2003, subclass ETmax_143min Baugh et al 2005, Supplymental Dataset, subclass ETmax_143min	125	Copy	Jul 24 06
Baugh et al 2003, subclass ETmax_83min Baugh et al 2005, Supplymental Dataset, subclass ETmax_83min	278	Copy	Jul 24 06
Baugh et al 2003, class MD Baugh et al 2005, Supplymental Dataset, class MD	1764	Copy	Jul 24 06
Baugh et al 2003, class M Baugh et al 2005, Supplymental Dataset, class M	6062	Copy	Jul 24 06
Baugh et al 2003, subclass MDpd_66min Baugh et al 2005, Supplymental Dataset, subclass MDpd_159min	159	Copy	Jul 24 06
Baugh et al 2003, subclass ETmax_66min Baugh et al 2005, Supplymental Dataset, subclass ETmax_66min	181	Copy	Jul 24 06
Baugh et al 2003, subclass ETmax_122min Baugh et al 2005, Supplymental Dataset, subclass ETmax_122min	118	Copy	Jul 24 06
Baugh et al 2003, subclass E_122min Baugh et al 2005, Supplymental Dataset, subclass E_122min	370	Copy	Jul 24 06
Baugh et al 2003, class ME Baugh et al 2005, Supplymental Dataset, class ME	2705	Copy	Jul 24 06
Baugh et al 2005, PAL-1 target genes Baugh et al 2005, T1 PAL-1 target genes	40	Copy	Jul 24 06
Baugh et al 2005, PAL-1 target_score 2-4 Baugh et al 2005, Supplymental Dataset, PAL-1 target genes, score 2,3,4	145	Copy	Jul 24 06
Baugh et al 2005, PAL-1 target_score5-7 Baugh et al 2005, Supplymental Dataset, PAL-1 target genes, score 5, 6, 7	17	Copy	Jul 24 06
Baugh et al 2005, PAL-1 target genes Baugh et al 2005, Supplymental Dataset, 308 PAL-1 target genes	308	Copy	Jul 24 06
Baugh et al 2005, parrerning involved PAL-1 target Baugh et al 2005, Fig7 and Table4, 14 PAL-1 target genes that likely involved in patterning	14	Copy	Jul 24 06
Baugh et al 2005, validated PAL-1 target genes Baugh et al 2005, T3 validated PAL-1 target genes	22	Copy	Jul 24 06
Baugh et al 2005, PAL-1 target genes score1 Baugh et al 2005, Supplymental Dataset, PAL-1 target genes, score 1	146	Copy	Jul 24 06
Bishop et al 2004 T2 Egl-9 hif-1 pathway genes Bishop et al 2004 Table2: 6 Egl-9 hif-1 pathway genes	6	Copy	Jun 9 06
Bishop et al 2004 T4 57 vhl-1 depend hif-1 indep Bishop et al 2004 Table4: 57 vhl-1 depend hif-1 independent genes	57	Copy	Jun 9 06
Bishop et al 2004 T1 Upregulated in vhl-1 vs WT Bishop et al 2004 Table1: 30 genes Upregulated in vhl-1 vs WT	30	Copy	Jun 9 06
Blacque et al 2005, T1 ciliated-cell transcriptome Blacque et al 2005 T1 Shown are all genes (46 in total) that are enriched for SAGE tags in the ciliated-cell transcriptome (C), with R1.5-fold enrichment versus the pan-neural transcriptome (P) and R2.0-fold enrichment versus the muscle (M) and gut (G) transcriptomes, and with a canonically-positioned (Pos) putative X box (i.e., within 250 bp of the start codon). Only genes with homology to a human gene (Blast E-value < e?10) are represented.	53	Copy	Jul 19 07
Blacque et al 2005, ST3 putative X Box genes Blacque et al 2005 ST3 Putative X Box Sequences Used to Derive a Consensus X Box Sequence: Only genes with a restricted expression pattern in many, if not all, ciliated cells of C. elegans were considered.	22	Copy	Jul 18 07
Blacque et al 2005, ST2 ciliated genes Blacque et al 2005 ST2 SAGE tag data for 42 genes known to be expressed in most ciliated cells (e.g., IFT-related genes) or in a subset of ciliated cells (e.g., tax-1, guanylate cyclases, receptors, and channels).	41	Copy	Jul 18 07
Blacque et al 2005, ST4 full list of X-Box-Contain Blacque et al 2005 S42 Full List of Putative X-Box-Containing Genes: Genes are ranked by X box score (homology to the consensus X box sequence). Only X boxes with scores >10.0 and within 1500 bp upstream of the gene start codons are included. Note also that only those genes with significant homology to a human gene are shown (Blast E-value < e.10).	1572	Copy	Jul 19 07
Blumenthal et al 2002, Table 2 Operons containing human disease gone orthologues, an expandedlist can be found in Blumenthal2002_suppDGO.txt, the Disease Gene Orthologue supplimentary file	13	Copy	Feb 21 08
Blumenthal et al 2002, Suppl DGO A supplimentary table showing the disease gene operons organized by disease with a short description of each gene	51	Copy	Feb 21 08
Blumenthal et al 2002, Suppl KS Operon gene pairs with confirmed spacing	472	Copy	Feb 21 08
Blumenthal et al 2002, Suppl Table 1 genes confirmed to be transpliced to SL2/SL12 from cDNA clone analysis, from the worm transcriptome project, lead by Y.Kohara.	635	Copy	Feb 21 08
Chen et al 2006, X-box containing genes down in da Chen et al 2006 C. elegans genes that contain X-box motifs in their promoters, are positively correlated with daf-19 in gene expression, and have reduced expression in daf-19(-) strains	11	Copy	Jul 18 07
Chen et al 2006, S2 X-box regulated genes Chen et al 2006 S2 X-box regulated genes	83	Copy	Jul 19 07
Chi et al. 2006, ST variably Up in all 3 mutants Chi et al 2006 Supplemental Table 42 genes variably up-regulated in all three mutants.	42	Copy	Jul 19 07
Chi et al. 2006, ST Commonly down in mutants Chi et al 2006 Summplement Table, 43 genes commonly down-regulated in all three mutants.	43	Copy	Jul 18 07
Chi et al. 2006, ST Up-reguulated in lin-35 Chi et al 2006 Supplemental Table 88 genes up-regulated in lin-35 mutant.	88	Copy	Jul 19 07
Chi et al. 2006, ST other lin-35/elf-1/dpl-1 regul Chi et al 2006 Supplemental Table: lin-35/elf-1/dpl-1 regulated genes that not in group.	24	Copy	Jul 18 07
Chi et al. 2006, ST down-regulated in elf-1;dpl-1; Chi et al 2006 Supplemental Table: 75 genes down-regulated in elf-1;dpl-1 mutant.	75	Copy	Jul 19 07
Custodia et al 2001 T2 Glut-S-transferase Custodia et al 2001 Table2: Glut-S-transferase	10	Copy	Jun 9 06
Custodia et al 2001 T2 Metallothionein Custodia et al 2001 Table2: Metallothionein	1	Copy	Jun 9 06
Custodia et al 2001 T2 Cytochrome P450 Custodia et al 2001 Table2: Cytochrome P450	16	Copy	Jun 9 06
Custodia et al 2001 T2 heat shock Custodia et al 2001 Table2: heat shock	6	Copy	Jun 9 06
Custodia et al 2001 T2 Yolk proteins Custodia et al 2001 Table2: Yolk proteins	5	Copy	Jun 9 06
Denver et al 2005, differentially expressed in MA Denver et al 2005 Supplement Table 1: 662 genes that differentially expressed in MA(Mutation Accumulation) lines.	662	Copy	Jul 19 07
Denver et al 2005, differentially expressed in NI Denver et al 2005 Supplement Table 2: 123 genes that differentially expressed in NI(Natual Isolate) lines.	123	Copy	Jul 19 07
Dybbs et al 2005, tom-1 vs wt different genes Dybbs2005 et al 2005, reduced expression in tom-1(nu468) compared with wt (fold-change <-0.5, p<0.01)	21	Copy	Jul 24 06
Dybbs et al 2005, missense and nonsense genes Dybbs2005 et al 2005, Supplymental Table1,List of Missense and Nonsense Alleles	239	Copy	Jul 24 06
Dybbs et al 2005, unc-43 vs wt differ genes Dybbs2005 et al 2005, Fig3, reduced expression in unc-43(n1186) compared with wt (fold-change <-0.5, p<0.01)	45	Copy	Jul 24 06
Fox et al 2005 S14/T2 Neurotransmitter-gated meta Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	8	Copy	Jul 19 07
Fox et al 2005, S11 previously unc-4::GFP neurons Fox et al 2005 Additional File 11: Genes previously known to be expressed in unc-4::GFP neurons. Published literature and wormbase http://www.wormbase.org were searched to identify 27 genes that are expressed in embryonic neurons that also express unc-4::GFP (I5, DA, SAB).	27	Copy	Jul 19 07
Fox et al 2005 S14/T2 TGF-beta-like signaling pep Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	8	Copy	Jul 18 07
Fox et al 2005, S15 Expressed only in unc-4::GFP Fox et al 2005 Additional File 15: Genes Expressed only in unc-4::GFP neurons.	968	Copy	Jul 19 07
Fox et al 2005, S14/T2 Serpentine Receptors Subuni Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	113	Copy	Jul 19 07
Fox et al 2005, S14/T2 Stomatin Subunit Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	7	Copy	Jul 18 07
Fox et al 2005, S14/T2 Innexins Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	6	Copy	Jul 18 07
Fox et al 2005, S14/T2 DEG/ENaC Subunit in unc-4: Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	3	Copy	Jul 18 07
Fox et al 2005, S10 N2 Enriched Genes Fox et al 2005 Additional File 10: genes are enriched 1.7fold (FDR .1%) in N2 cells compared to unc-4::GFP neurons.	1586	Copy	Jul 19 07
Fox et al 2005 S14/T2 Adhesion Proteins in unc-4: Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	18	Copy	Jul 19 07
Fox et al 2005 S14/T2 Neuropeptide Processing & S Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	7	Copy	Jul 18 07
Fox et al 2005, S14/T2 Axon Guidance and Outgrowt Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	15	Copy	Jul 19 07
Fox et al 2005, S14/T2 Wingless Signaling Subunit Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	12	Copy	Jul 19 07
Fox et al 2005, S14/T2 Endocytosis Subunit in unc Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	21	Copy	Jul 19 07
Fox et al 2005, S14/T2 Neuropeptides Subunit Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	32	Copy	Jul 19 07
Fox et al 2005, S9 unc-4::GFP Enriched Genes Trans Fox et al 2005 Supplement6: 1012 unc-4::GFP Enriched Genes Transcripts elevated 1.7 fold above baseline at a FDR .1%.	1012	Copy	Jul 19 07
Fox et al 2005, S14/T2 G-proteins Subunit in unc- Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	10	Copy	Jul 19 07
Fox et al 2005, S14/T2 Acetylcholine Receptor Sub Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	17	Copy	Jul 18 07
Fox et al 2005, S14/T2 Exocytosis and Neurotransm Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	16	Copy	Jul 19 07
Fox et al 2005, S14/T2 Vesicle Loading Subunit Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	13	Copy	Jul 19 07
Fox et al 2005 S14/T2 Transcription factor Subuni Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	154	Copy	Jul 19 07
Fox et al 2005, S14/T2 Ligand-gated ion channel S Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	9	Copy	Jul 18 07
Fox et al 2005, S14/T2 Other G-protein Signaling Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	13	Copy	Jul 18 07
Fox et al 2005, S14/T2 Neuropeptide Receptor Subu Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	9	Copy	Jul 18 07
Fox et al 2005, S14/T2 Potassium Channels Subunit Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	23	Copy	Jul 19 07
Fox et al 2005, S14/T2 Acetylcholine Receptor Sub Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	8	Copy	Jul 19 07
Fox et al 2005 S14/T2 Adhesion Proteins in unc-4: Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	25	Copy	Jul 19 07
Fox et al 2005, S14/T2 Synapse Associated Subunit Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	11	Copy	Jul 18 07
Fox et al 2005, S14/T2 Calcium Channels subunit i Fox et al 2005 Additional File 14/Table2: Summary of unc-4::GFP enriched and expressed (EGs) transcripts in selected categories. This file is an expanded version of Table 2 (see text) in which EGs are added to the list of enriched genes. Genes are organized as in Table 2 according to molecular function (KOG description, other description http://www.wormbase.org). Statistical rank is indicated for each enriched transcript and "EG" designates transcripts that are EGs.	11	Copy	Jul 19 07
Gaudet et al 2002 ST2 candidate pharyngeal genes Gaudet et al 2002 Supplement Table2: Expression of microarray positives, assayed with GFP::HIS2B reporters. Positives are ranked according to their average log2(par-1/skn-1) ratio; *F28F9.1 has a par-1/skn-1 ratio below the cut-off for inclusion in the positive set (i.e. <2.0)	12	Copy	Jul 18 07
Gaudet et al 2002, ST1 Known pharyngeal genes Gaudet et al 2002 Supplement Table1: Known pharyngeal genes detected by the microarrays.	18	Copy	Jul 18 07
Gaudet et al 2002, ST3 candidate pharyngeal genes Gaudet et al 2002 Supplement Table3: List of microarray positives. Positives are genes with an average log2(par-1/skn-1)>=2.0;	240	Copy	Jul 19 07
Golden et al 2004, daf-2 differentially expressed Golden et al 2004, Table 2, daf-2 genes differentially expressed as a function of time	17	Copy	Jul 24 06
Golden et al 2004, N2 vs daf-2 different genes at Golden et al 2004, Table 3, Genes that differentiate N2 and daf-2 at 9days	6	Copy	Jul 24 06
Golden et al 2004, N2 vs daf-2 age different gene Golden et al 2004, Table 1, Genes that differentiate N2 and daf-2 with respect to age	19	Copy	Jul 24 06
Golden et al 2004, N2 genes upregulated as aging Golden et al 2004, Table 2, N2 genes differentially expressed as a function of time	10	Copy	Jul 18 07
Golden et al 2004, N2 vs daf-2 different genes at Golden et al 2004, Table 3, Genes that differentiate N2 and daf-2 at 4days	18	Copy	Jul 24 06
Golden et al 2004, upreguated as aging in daf-2 Golden et al 2004, Table 2, daf-2 genes differentially expressed as a function of time	5	Copy	Jul 18 07
Golden et al 2004, N2 vs daf-2 different genes at Golden et al 2004, Table 3, Genes that differentiate N2 and daf-2 at 19days	21	Copy	Jul 24 06
Golden et al 2004, N2 downregulated as aging Golden et al 2004, Table 2, N2 genes differentially expressed as a function of time	13	Copy	Jul 18 07
Golden et al 2004, N2 vs daf-2 different genes at Golden et al 2004, Table 3, Genes that differentiate N2 and daf-2 at 14days	4	Copy	Jul 24 06
Golden et al 2004, N2 differentially expressed gen Golden et al 2004, Table 2, N2 genes differentially expressed as a function of time	22	Copy	Jul 24 06
Golden et al 2004, downregulated as aging in daf-2 Golden et al 2004, Table 2, daf-2 genes differentially expressed as a function of time	12	Copy	Jul 18 07
GuhaThakurta et al 2002 T1 upregu on heat stress GuhaThakurta et al 2002 Table1: genes upregulated on heat stress	28	Copy	Jun 9 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,2)	184	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,6)	91	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,1)	77	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,2)	98	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,1)	158	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,5)	98	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,3)	156	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,5)	71	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,3)	118	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,4)	99	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,4)	201	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,3)	137	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,2)	81	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,3)	85	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,4)	171	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,5)	132	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,6)	94	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,6)	89	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,4)	102	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,2)	78	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,6)	72	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,3)	121	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,1)	51	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,5)	88	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,4)	137	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,1)	136	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,3)	84	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,5)	145	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,6)	82	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(2,2)	76	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,5)	247	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(6,6)	99	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(1,1)	134	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(4,1)	69	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(3,4)	82	Copy	Jul 24 06
Hill et al 2000, developmentally modulated cluster Hill et al 2000, Supplymental Dataset, developmentally modulated genes cluster(5,2)	88	Copy	Jul 24 06
Hristova et al 2005, Table4 up-regulated in lin-14 Hristova et al 2005 Table 4: 6 genes whose mRNA levels upregulated significantly in lin-14 mutant	6	Copy	Jul 18 07
Hristova et al 2005, Table4 down-regulated in lin- Hristova et al 2005 Table 4: 15 genes whose mRNA levels down regulated significantly in lin-14 mutant	16	Copy	Jul 18 07
Hristova et al 2005, Table4 up-regulated in lin-14 Hristova et al 2005 Table 4: 12 genes whose mRNA levels upregulated significantly in lin-4 mutant	12	Copy	Jul 18 07
Hristova et al 2005, Table4 down-regulated in lin- Hristova et al 2005 Table 4: 9 genes whose mRNA levels down regulated significantly in lin-4 mutant	10	Copy	Jul 18 07
HWiener et al 2005, Table 1 Progressive inbcrease of gene expression in daf-2 muntants on a 1, 6, and 10-day sample rate with 1 and 6-day controlls	59	Copy	Feb 21 08
HWiener et al 2005, Table 1 Genes listed by their increase or decrease broken down by samples taken at 3 periods over 10 days, see table 1s for further data	58	Copy	Feb 21 08
HWiener et al 2005, Table 2 Comparison of Gene expression between daf-2 and controll worms on day 6 broken down by gene family and increase or decrease	274	Copy	Feb 21 08
HWiener et al 2005, Figure 2b Heat Shock Protein like genes in daf-2 muntants and controll worms with ~60-fold increases in the muntants	6	Copy	Feb 21 08
HWiener et al 2005, Table 3 Comparison of gene expression between 10-day old daf-2 muntants and 6-day old controll worms broken down by gene family and increase or decrease	67	Copy	Feb 21 08
HWiener et al 2005, Table2 Comparison of gene expression of daf-2 and control worms on day 6, giveing genes grouped by gene family and increase or decrese	86	Copy	Feb 21 08
HWienver et al 2005 ST3 10 day daf-2 vs. 6 day co HWienver et al 2005 Supplement Table3: Comparison of gene expression between 10-day old daf-2 and 6-day old control worms	140	Copy	Jul 19 07
HWienver et al 2005, ST4 dauer vs. mixed stage HWienver et al 2005 Supplement Table4: Gene families with significant differential regulation in dauer versus mixed stage SAGE libraries	66	Copy	Jul 19 07
HWienver et al 2005 ST4 Up in dauer vs. mixed sta HWienver et al 2005 Supplement Table4: Gene families with significant differential regulation in dauer versus mixed stage SAGE libraries	28	Copy	Jul 19 07
HWienver et al 2005 ST1 Progressive increased exp HWienver et al 2005 Supplement Table1: Progressive increase gene expression in daf-2 worm	31	Copy	Jul 18 07
HWienver et al 2005 ST2 altered expression in daf HWienver et al 2005 Supplement Table2: Comparison of gene expression between daf-2 and control worms on day 6	275	Copy	Jul 19 07
Jiang et al 2001 Fig1 hermaphrodite-enriched TF Jiang et al 2001 Fig1 hermaphrodite-enriched Transcriptional factors	23	Copy	Jun 9 06
Jiang et al 2001 Fig1 male-enriched TF Jiang et al 2001 Fig1 male-enriched Transcription factors	14	Copy	Jun 9 06
Jiang et al 2001 Fig2 cyclin-genes Jiang et al 2001 Fig2 7 cyclin-genes	7	Copy	Jun 9 06
Jiang et al 2001 Fig1 male-enriched neuronal Jiang et al 2001 Fig1 male-enriched neuronal genes	40	Copy	Jun 9 06
Jiang et al 2001 Fig3 Rb complex genes Jiang et al 2001 Fig3 Rb tumor suppressor complex genes	9	Copy	Jun 9 06
Jiang et al 2001 Fig4 Wnt signaling genes Jiang et al 2001 Fig4 Wnt signaling genes	12	Copy	Jun 9 06
Jiang et al 2001 Fig1 hermaphrodite-enriched neuro Jiang et al 2001 Fig1 hermaphrodite-enriched neuronal	2	Copy	Jun 9 06
Jones et al 2001 Non dauer genes P<0.05 Jones et al 2001 Non dauer genes P<0.05	530	Copy	Jun 9 06
Jones et al 2001 T3 20 most abundant Dauer Jones et al 2001 Table 3: The Twenty Most Abundant Dauer SAGE Tags	20	Copy	Jun 9 06
Jones et al 2001 Dauer specific genes P<0.05 Jones et al 2001 Dauer specific genes P<0.05	356	Copy	Jun 9 06
Jones et al 2001 T2 lifespan and Dauer Jones et al 2001 Table2: Expression of Genes Implicated Previousl in Lifespan and Dauer	29	Copy	Jun 9 06
Jones et al 2001 T3 20 most abundant Mixed-stage Jones et al 2001 Table3: The Twenty Most Abundant Mixed-Stage-Specific SAGE Tags	20	Copy	Jun 9 06
Kunitomo et al 2005, Table 1 top neuron-expressed Kunitomo et al 2005 Table 1: 24 top ranked neuron-expressed genes	23	Copy	Jul 19 07
Kunitomo et al 2005, S2 genes with Xbox Kunitomo et al 2005 Supplementary 2: 14 genes with one or more X-boxes in their promoter region. These genes are expected to be expressed in cilliated sensory neurons under the control of the DAF-19 transcription factor, are also enriched in the che-1::PABP RNA preparations.	14	Copy	Jul 18 07
Kunitomo et al 2005, S2 muscle neuron-expressed ge Kunitomo et al 2005 Supplementary 2: 53 muscle neuron-expressed genes	43	Copy	Jul 18 07
Kunitomo et al 2005, S2 intestine neuron-expressed Kunitomo et al 2005 Supplementary 2: 64 intestine neuron-expressed genes	49	Copy	Jul 18 07
Kunitomo et al 2005, S2 sensory neuron-expressed g Kunitomo et al 2005 Supplementary 2: 20 sensory neuron-expressed genes	17	Copy	Jul 18 07
Kunitomo et al 2005, S2 motor neuron-expressed gen Kunitomo et al 2005 Supplementary 2: 9 motor neuron-expressed genes	5	Copy	Jul 18 07
Kwon et al 2004 T1 late-induction Ethanol-response Kwon et al 2004 Table1: Class2 late-induction Ethanol-response	58	Copy	Jun 9 06
Kwon et al 2004 T1 late-repression Ethanol-respon Kwon et al 2004 Table1: Class4 late-repression Ethanol-response	46	Copy	Jun 9 06
Kwon et al 2004 T1 Class1 rapid-induction Ethanol Kwon et al 2004 Table1: Class1 rapid-induction Ethanol-response	7	Copy	Jun 9 06
Kwon et al 2004 T1 transient-induction Ethanol-res Kwon et al 2004 Table1: Class3 transient-induction Ethanol-response	6	Copy	Jun 9 06
Link et al 2003 T3 Abeta highly induced Link et al 2003 Table3: Abeta highly induced	4	Copy	Jun 9 06
Link et al 2003 T2 Abeta induced Link et al 2003 Table2: Abeta induced	12	Copy	Jun 9 06
Link et al 2003 T2 Abeta repressed Link et al 2003 Table2: Abeta repressed	11	Copy	Jun 9 06
Liu et al 2005, Regulated regulatory genes Regulated regulatory genes. This table lists all transcription factors, signaling molecules, possible hormone biosynthetic enzymes, and other regulatory genes that are significantly regulated in our data.	243	Copy	Oct 9 07
Liu et al 2005, Regulatory genes regulated by TGF Regulatory genes regulated by TGF-beta signaling, grouped by gene family or pathway	50	Copy	Oct 8 07
Liu et al 2005, Genes regulated by TGF-beta Regulated regulatory genes regulated by TGF-beta	146	Copy	Oct 8 07
Liu et al 2005, Regulatory genes regulated by TGF Regulatory genes regulated by TGF-beta signaling, grouped by gene family or pathway, a complete list that was used to make table 4	276	Copy	Oct 9 07
Liu et al 2005, Signal transduction pathways that Signal transduction pathways, TFG-beta and Insulin, that regulate dauer formation	22	Copy	Oct 8 07
Liu et al 2005, Gene regulatory events under the c A model for transcriptional regulatory events under the conrol of TGF-beta signaling suggested in this paper	14	Copy	Oct 8 07
Liu et al 2005, Data comparison to other publicati Comparison of microarray data in this paper to other published experiments	7	Copy	Oct 8 07
Liu et al 2005, Genes regulated by TGF-beta Dauer and aging genes regulated by TGF signaling grouped by gene family	18	Copy	Oct 8 07
Liu et al 2005, Strongly regulated genes Strongly regulated genes ith a regulation greater than 2.145 fold	1236	Copy	Oct 9 07
Lund et al 2002 Fig2D mariner Lund et al 2002 Fig2D mariner genes	39	Copy	Jun 9 06
Lund et al 2002 Fig2B yeast SIR2 homologs Lund et al 2002 Fig2B homomologs of yeast SIR2	4	Copy	Jun 9 06
Lund et al 2002 Fig2A insulin-related Lund et al 2002 Fig2A insulin-related genes	12	Copy	Jun 9 06
Lund et al 2002 Aging time course Fig3A muscle Lund et al 2002 Fig3A muscle	44	Copy	Jun 9 06
Lund et al 2002 Fig3B neuro-specific genes Lund et al 2002 Fig3B neuro-specific genes	100	Copy	Jun 9 06
Lund et al 2002 Fig4 Mount 15 Lund et al 2002 Fig4 genes in Mount 15	97	Copy	Jun 9 06
Lund et al 2002 Fig1 aging-regulated genes Lund et al 2002 Fig1: maturity aging-regulated genes	163	Copy	Jun 9 06
Lund et al 2002 Fig3C Germline-intrinsic Lund et al 2002 Fig3C Germline-intrinsic	100	Copy	Jun 9 06
Lund et al 2002 Aging time course Fig2C heatshock Lund et al 2002 Aging time course Fig2C heatshock	26	Copy	Jun 9 06
Lund et al 2002 Fig2D Tc3 genes Lund et al 2002 Fig2D Tc3 genes	18	Copy	Jun 9 06
Lund et al 2002 Fig3D Oocyte-en Lund et al 2002 Fig3D Oocyte-enriched	99	Copy	Jun 9 06
McCarroll et al 2004 SFig5 conserved w/ yeast McCarroll et al 2004 SFig5 conserved genes between worms and yeast	1615	Copy	Jun 9 06
McCarroll et al 2004 SFig1-4 conserved w/ Drosoph McCarroll et al 2004 SFig1-4 conserved genes between worms andDrosophila	3849	Copy	Jun 9 06
McElwee et al 2003 T1 targets of daf-16 McElwee et al 2003 Table1: targets of daf-16	35	Copy	Jun 9 06
McElwee et al 2003 Fig4 daf-16 target lifspan McElwee et al 2003 Fig4 daf-16 target lifspan genes	5	Copy	Jun 9 06
McElwee et al 2004 ST2 Not up-regulated in daf-2 McElwee et al 2004 ST2 Expression of cytochrome P450 genes in daf-2 mutants and dauer larvae. Not up-regulated in daf-2 mutants or dauer larvae (41/77)	41	Copy	Jul 18 07
McElwee et al 2004 ST2 Up-regulated in dauer larv McElwee et al 2004 ST2 Expression of cytochrome P450 genes in daf-2 mutants and dauer larvae. Up-regulated in dauer larvae alone (3/77)	3	Copy	Jul 18 07
McElwee et al 2004 ST2 Up-regulated in daf-2 muta McElwee et al 2004 ST2 Expression of cytochrome P450 genes in daf-2 mutants and dauer larvae. Up-regulated in daf-2 mutants alone (12/77)	12	Copy	Jul 18 07
McElwee et al 2004 ST2 Up in both daf-2 mt and da McElwee et al 2004 ST2 Expression of cytochrome P450 genes in daf-2 mutants and dauer larvae. Up-regulated in both daf-2 mutants and dauer larvae (6/77)	6	Copy	Jul 18 07
Menzel et al 2001 T3 CYP genes Menzel et al 2001 Table3: 80 CYP genes	39	Copy	Jun 9 06
Menzel et al 2007, PCB53-induced expression with Menzel et al 2007 Figure 2a: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with CYP genes	13	Copy	Oct 8 07
Menzel et al 2007, RNAi-dependant reproductive ca Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of SRD genes	7	Copy	Oct 8 07
Menzel et al 2007, PCB53-induced expression with Menzel et al 2007 Figure 2c: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with esterase/lipase/thioesterase genes	12	Copy	Aug 29 07
Menzel et al 2007, PCB53-induced expression with Menzel et al 2007 Figure 2c: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with esterase/lipase/thioesterase genes	12	Copy	Oct 8 07
Menzel et al 2007, PCB53-induced expression of GF Menzel et al 2007 Figure 4: Expression of three different promoter::GFP transgenic lines with and without exposure to PCB52	3	Copy	Oct 8 07
Menzel et al 2007, RNAi-dependant reproductive ca Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of lipase/esterase genes	10	Copy	Oct 8 07
Menzel et al 2007, RNAi-dependant reproductive ca Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of SRD genes	7	Copy	Aug 29 07
Menzel et al 2007, Changes in fat storage with Ni Menzel et al 2007 Figure 5b: Canges in the fat storage of non-starved young adults under PCB52 exposure with quanitative representation of Nile red stain	8	Copy	Aug 29 07
Menzel et al 2007, Changes in fat storage with Ni Menzel et al 2007 Figure 5a: Canges in the fat storage of non-starved young adults under PCB52 exposure with Nile red stain showing fat localization	8	Copy	Oct 8 07
Menzel et al 2007, RNAi-dependant reproductive ca Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of of CPY genes	13	Copy	Oct 8 07
Menzel et al 2007, Changes in fat storage with Ni Menzel et al 2007 Figure 5a: Canges in the fat storage of non-starved young adults under PCB52 exposure with Nile red stain showing fat localization	8	Copy	Aug 29 07
Menzel et al 2007, PCB53-induced expression of GF Menzel et al 2007 Figure 4: Expression of three different promoter::GFP transgenic lines with and without exposure to PCB52	3	Copy	Aug 29 07
Menzel et al 2007, PCB53-induced expression with Menzel et al 2007 Figure 2b: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with SDR genes	9	Copy	Oct 8 07
Menzel et al 2007, PCB53-induced expression with Menzel et al 2007 Figure 2b: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with SDR genes	9	Copy	Aug 29 07
Menzel et al 2007, Changes in fat storage with Ni Menzel et al 2007 Figure 5b: Canges in the fat storage of non-starved young adults under PCB52 exposure with quanitative representation of Nile red stain	8	Copy	Oct 8 07
Menzel et al 2007, PCB53-induced expression with Menzel et al 2007 Figure 2a: Summarization of data on PCB52-induced gene expression, RNAi-coupled reproduction assay and RNAi effciency with CYP genes	13	Copy	Aug 29 07
Menzel et al 2007, RNAi-dependant reproductive ca Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of lipase/esterase genes	10	Copy	Aug 29 07
Menzel et al 2007, RNAi-dependant reproductive ca Menzel et al 2007 Figure 3: RANi-dependant effects on the reproductive capacity in controll and PCB52-treated nematodes, RNAi of of CPY genes	13	Copy	Aug 29 07
Murphy et al 2003 Fig2 Class2 shorten lifespan Murphy et al 2003 Fig2 Class2 shorten lifespan	246	Copy	Jun 9 06
Murphy et al 2003 Fig2 Class1 elongate lifespan Murphy et al 2003 Fig2 Class1 elongate lifespan	253	Copy	Jun 9 06
PauliF et al 2006, ST8 germline enriched genes PauliF et al 2006, Sup. Table 8. 1135 genes enriched in the germline. http://elegans.bcgsc.ca/perl/eprofile/index	1135	Copy	Jul 19 07
PauliF et al 2006, ST7 muscle enriched genes PauliF et al 2006, Sup. Table 7. 230 genes enriched in the muscle. http://elegans.bcgsc.ca/perl/eprofile/index	231	Copy	Jul 19 07
PauliF et al 2006, ST5 commonly expressed genes PauliF et al 2006, Sup. Table 5. 510 genes commonly expressed in the intestine, muscle and germline. http://elegans.bcgsc.ca/perl/eprofile/index	510	Copy	Jul 19 07
PauliF et al 2006, ST6 intestine-enriched genes PauliF et al 2006, Sup. Table 6. 624 genes enriched in the intestine. http://elegans.bcgsc.ca/perl/eprofile/index	624	Copy	Jul 19 07
PauliF et al 2006, ST3 intestine-expressed genes PauliF et al 2006, Sup. Table 3. 271 intestine-expressed genes with known anatomical expression pattern. http://elegans.bcgsc.ca/perl/eprofile/index	271	Copy	Jul 19 07
PauliF et al 2006, ST9 intestine-expressed with GA PauliF et al 2006, Sup. Table 9. 820 intestine-expressed genes with GATA DNA motifs in their promoters. http://elegans.bcgsc.ca/perl/eprofile/index	815	Copy	Jul 19 07
Portman et al 2004 T1 newly found ray-genes in25c Portman et al 2004 Table1: newlyfound ray-genes in 25 candidates	13	Copy	Jun 9 06
Portman et al 2004 T1 10 previously-known ray gene Portman et al 2004 Table1 10 previously-known ray genes	8	Copy	Jun 9 06
Portman et al 2004 T1 25 candidate ray genes Portman et al 2004 Table1 25 candidate ray genes	25	Copy	Jun 9 06
PWang et al 2005, Supplimental Table 3 Wang et al 2005 Supplemental Table 3: 11 genes showed expression in a subset of cells where CeTwist is expressed. They were defined as candidate target genes of CeTwist and CeE/DA.	11	Copy	Jul 18 07
PWang et al 2005, Supplimental Table 1 Wang et al 2005 Supplemental Table 2: Down-regulated genes upon overexpression of both CeTwist and CeE/DA in microarray.	34	Copy	Jul 19 07
PWang et al 2005, Supplimental Table 1 Wang et al 2005 Supplemental Table 1: Up-regulated genes upon overexpression of both CeTwist and CeE/DA in microarray.	159	Copy	Jul 18 07
ReichertK et al 2005 T2 xenobiotic induced C-type ReichertK et al 2005 Table2: xenobiotic induced C-type-lectins	6	Copy	Jun 9 06
ReichertK et al 2005 T1 xenobiotic induced UDP-gl ReichertK et al 2005 Table1: xenobiotic induced UDP-glucoronosyltransferases	3	Copy	Jun 9 06
ReichertK et al 2005 T2 xenobiotic induced Collag ReichertK et al 2005 Table2: xenobiotic induced Collagene	23	Copy	Jun 9 06
ReichertK et al 2005 T1 xenobiotic induced P450 ReichertK et al 2005 Table1: xenobiotic induced P450-b5	10	Copy	Jun 9 06
ReichertK et al 2005 T1 xenobiotic induced GSTs ReichertK et al 2005 Table1: xenobiotic induced GSTs	4	Copy	Jun 9 06
ReichertK et al 2005 T3 xenobiotic downregulated ReichertK et al 2005 Table3: 153 xenobiotic downregulated	43	Copy	Jun 9 06
ReichertK et al 2005 T1 ReichertK et al 2005 Table1: xenobiotic induced Carboxylesterases	3	Copy	Jun 9 06
Reinke et al 2000, oocyte enriched genes Reinke et al 2004, Fig5 oocyte enriched genes	8	Copy	Jul 18 07
Reinke et al 2000, germline intrinsic genes Reinke et al 2004, Fig6 Germline Instrinsic genes	7	Copy	Jul 19 07
Reinke et al 2004, wt herm vs wt herm enriched gen Reinke et al 2004, Fig1 IIIb wt male vs wt herm enriched genes	1269	Copy	Jul 24 06
Reinke et al 2004, male sperm Reinke et al 2004, Fig2b male sperm	105	Copy	Jul 24 06
Reinke et al 2004, mixed sperm soma Reinke et al 2004, Fig2a mixed sperm soma	478	Copy	Jul 24 06
Reinke et al 2004, list of genes in cluster C Reinke et al 2004, Fig5 list of genes in cluster C	861	Copy	Jul 24 06
Reinke et al 2004, GO categories Reinke et al 2004, Fig3 GO categories	1388	Copy	Jul 24 06
Reinke et al 2004, mixed oogenesis soma Reinke et al 2004, Fig2a mixed oogenesis soma	620	Copy	Jul 24 06
Reinke et al 2004, list of genes in cluster F Reinke et al 2004, Fig5 list of genes in cluster F	715	Copy	Jul 24 06
Reinke et al 2004, wt males vs glp4 male enriched Reinke et al 2004, Fig1 II wt males vs glp4 male enriched genes	1092	Copy	Jul 24 06
Reinke et al 2004, wt vs glp-4 enriched genes Reinke et al 2004, Fig1 I wt vs glp-4 enriched genes	3143	Copy	Jul 24 06
Reinke et al 2004, fem3 enriched genes Reinke et al 2004, Fig1 Vb fem3 enriched genes	1343	Copy	Jul 24 06
Reinke et al 2004, shared sperm Reinke et al 2004, Fig2b shared sperm	703	Copy	Jul 24 06
Reinke et al 2004, spermatogenesis enriched genes Reinke et al 2004, Fig2a spermatogenesis enriched genes	865	Copy	Jul 24 06
Reinke et al 2004, list of genes in cluster B Reinke et al 2004, Fig5 list of genes in cluster B	736	Copy	Jul 24 06
Reinke et al 2004, list of genes in cluster order Reinke et al 2004, Fig5 list of genes in cluster order	5070	Copy	Jul 24 06
Reinke et al 2004, herm sperm Reinke et al 2004, Fig2b herm sperm	162	Copy	Jul 24 06
Reinke et al 2004, list of genes in cluster D Reinke et al 2004, Fig5 list of genes in cluster D	715	Copy	Jul 24 06
Reinke et al 2004, list of genes in cluster E Reinke et al 2004, Fig5 list of genes in cluster E	1170	Copy	Jul 24 06
Reinke et al 2004, herm soma enriched genes Reinke et al 2004, Fig1 IVa herm soma enriched genes	460	Copy	Jul 24 06
Reinke et al 2004, IVb male soma enriched genes Reinke et al 2004, Fig1 IVb male soma enriched genes	433	Copy	Jul 24 06
Reinke et al 2004, Fig2b shared gemlines Reinke et al 2004, Fig2b shared gemlines	253	Copy	Jul 24 06
Reinke et al 2004, oogenesis enriched genes Reinke et al 2004, Fig2a oogenesis enriched genes	1030	Copy	Jul 24 06
Reinke et al 2004, wt herm vs wt male enriched gen Reinke et al 2004, Fig1 IIIa wt herm vs wt male enriched genes	1935	Copy	Jul 24 06
Reinke et al 2004, fem-1 enriched genes Reinke et al 2004, Fig1 Va fem-1 enriched genes	1650	Copy	May 15 07
Reinke et al 2004, intrinsic Reinke et al 2004, Fig2a intrinsic	1248	Copy	Jul 24 06
Reinke et al 2004, male germline Reinke et al 2004, Fig2b male germline	31	Copy	Jul 24 06
Reinke et al 2004, list of genes in cluster A Reinke et al 2004, Fig5 list of genes in cluster A	606	Copy	Jul 24 06
Robertson et al 2005, Fig3A newly expressed in 12- Robertson et al 2005 Fig 3A: 3 genes that are newly expressed in 8- to 12-cell stage.	3	Copy	Jul 18 07
Robertson et al 2005, Fig3B maternel genes Robertson et al 2005 Fig 3B: 16 maternal genes that are maternally supplied and either maintained at a high level in early embryos(Type I) or degraded in somatic blastomeres but maintained in the germline lineage in early embryos(Type II). Type II maternal genes is downregulated in 12-cell-stage compared to 4-cell-stage. Type I basically remain unchanged.	16	Copy	Jul 19 07
Robertson et al 2005, Fig3B zygotic genes Robertson et al 2005 Fig 3B: 7 zygotic genes that are expressed only zygotically in early embryos. They are elevated in expression at the 12-cell stage versus the 4-cell stage.	7	Copy	Jul 19 07
Robertson et al 2005, Fig4 skin-1 dependent genes Robertson et al 2005 Fig 4: 50 genes that are zygotically expressed (up-regulated in 12-cell embryos versus 4-cell embryos) and whose expression is down-regulated in skn-1 samples (12-cell embryos versus 4-cell embryos) at least threefold in all three arrays.	50	Copy	Jul 18 07
Romagnolo et al 2002 Fig3b secretion Romagnolo et al 2002 Fig3b 6 secretion	6	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b Adhesion Romagnolo et al 2002 Fig3b 16 Adhesion	16	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b Cell Structure Romagnolo et al 2002 Fig3b 10 Cell Structure	10	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b others Romagnolo et al 2002 Fig3b 31 others	31	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b Proteases Romagnolo et al 2002 Fig3b 20 Proteases	20	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b Oxidation Romagnolo et al 2002 Fig3b Oxidation genes	13	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b Protein Synthesis Romagnolo et al 2002 Fig3b 19 Protein Synthesis	19	Copy	Jun 9 06
Romagnolo et al 2002 Fig2a heat shock Romagnolo et al 2002 Fig2a 29 heat shock	29	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b Unkown Romagnolo et al 2002 Fig3b Unkown	411	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b Transporters Romagnolo et al 2002 Fig3b 26 Transporters	26	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b TF Romagnolo et al 2002 Fig3b 28 Transcripton Factors	28	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b Metabolism Romagnolo et al 2002 Fig3b 40 Metabolism	40	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b signaling Romagnolo et al 2002 Fig3b 82 signaling	82	Copy	Jun 9 06
Romagnolo et al 2002 Fig5 genes in let-60 timecour Romagnolo et al 2002 Fig5 34 genes in let-60 timecourse	34	Copy	Jun 9 06
Romagnolo et al 2002 Fig3b Detoxification Romagnolo et al 2002 Fig3b 6 Detoxification	6	Copy	Jun 9 06
Roy et al 2002 S2 positivecontrol L1 muscle Roy et al 2002 Supplement2: positivecontrol L1 muscle	18	Copy	Jun 9 06
Roy et al 2002 S3 muscle genes Roy et al 2002 Supplement3: muscle genes	31	Copy	Jun 9 06
Shapira et al 2006, Infection responce list List of genes induced and repressed along with gut or muscle enrichment and responce to cadmium	229	Copy	Oct 8 07
Shapira et al 2006, elt-2 knockdown affects the ex elt-2 knockdown selectively affects the expression of infection responce genes, looking at intestine function and structural genes as well as cadmium exposure	10	Copy	Oct 8 07
Shen et al 2005 T2 hif-1indepen hypoxia Shen et al 2005 T2 47 hif-1 indepenent hypoxia	47	Copy	Oct 30 07
Shen et al 2005 T1 hif-1 depend hypoxia Shen et al 2005 T1 63 hif-1 dependent hypoxia	63	Copy	Jun 9 06
Steina et al 2007, Genes enriched in both Embryoni Genes enriched in both Embryonic and Larval A-class neurons classified and grouped by category	162	Copy	Oct 9 07
Steina et al 2007, Neural genes conatining the N1- Candidate neural genes containing predicted pan-neural motif ("N1-box") (Ruvinsky et al 2006) that are detected in the Larval and/or Embryonic Pan-neural Enriched datasets	82	Copy	Oct 9 07
Steina et al 2007, Embryonic A-class and AFD/AWB e Genes detected in both the Embryonic A-class enriched dataset and the AFD/AWB enriched dataset (Colosimo et al 2004)	139	Copy	Oct 9 07
Steina et al 2007, Dauer genes in pan-neural datas Dauer genes are highly represented in the Pan neural datasets with a majority of dauer pathway genes being enriched	27	Copy	Oct 9 07
Steina et al 2007, Muscle enriched genes the 50 top ranked muscle-enriched genes	50	Copy	Oct 9 07
Steina et al 2007, Embryonic A-class enriched gene Genes detected in the Embryonic A-class enriched dataset but not the Embryonic Pan neural enriched dataset	474	Copy	Oct 8 07
Steina et al 2007, Uncharacterized enriched genes Genes encoding Uncharacterized Conserved Proteins (with human homologs) that are enriched in both the embryonic and larval pan-neural datasets	27	Copy	Oct 9 07
Steina et al 2007, genes in germline, muscle, and Genes commonly enriched in the Germline, Muscle, or Intestine (GMI) dataset (based on Pauli et al, Development, 2006) and larval A-class enriched dataset	30	Copy	Oct 9 07
Steina et al 2007, Enriched uncharacterized human 108 unique transcripts from all enriched datasets (EP, LP, EA, LA) that have uncharacterized human homologs	108	Copy	Oct 9 07
Steina et al 2007, Categorized larval pan-neural g Categorized larval pan-neural enriched genes with known expression patterns	168	Copy	Oct 8 07
Stetina et al 2007, SMAD receptors Major transcription factor families enriched in C. elegans neurons SMAD receptor group	3	Copy	Aug 29 07
Stetina et al 2007, HMG box receptors Major transcription factor families enriched in C. elegans neurons High Mobility Group box receptor group	7	Copy	Oct 8 07
Stetina et al 2007, Larval pan-neural compared to Larval pan-neural hybridization compared to average reference intensities to identify differentially expressed transcripts Red are increased and green are depressed	6	Copy	Oct 8 07
Stetina et al 2007, differentially expression in A Differential expression of axon guidance cues and receptors in A-class motor neurons graphic	6	Copy	Aug 29 07
Stetina et al 2007, Genes enriched in pan-neural d representative genes enriched in the larval pan-neural dataset expressed in the listed neuron	8	Copy	Aug 29 07
Stetina et al 2007, GFP reporters validate dataset GFP reporters for representitive genes from the neuron-enriched datasets showing the veracity for the neuronal microarray datasets	6	Copy	Aug 29 07
Stetina et al 2007, dauer pathway genes dauer pathway genes are enriched in either the larval pan-neural or embryonic pan-neural datasets	26	Copy	Oct 8 07
Stetina et al 2007, Differences in pan-neural and Genes expressed in mechanosensory neurons are differentially detected in the larval pan-neural dataset versus the larval A-class dataset, This data shows the difference in the expression of these genes	9	Copy	Oct 8 07
Stetina et al 2007, GFP reporters validate dataset GFP reporters for representitive genes from the neuron-enriched datasets showing the veracity for the neuronal microarray datasets	6	Copy	Oct 8 07
Stetina et al 2007, Interactome map of pan-neural A comparison to transcripts enriched in both embryonic pan-neural and larval pan-neural datasets revealed a single large interaction cluster	53	Copy	Oct 9 07
Stetina et al 2007, HMG box receptors Major transcription factor families enriched in C. elegans neurons High Mobility Group box receptor group	7	Copy	Aug 29 07
Stetina et al 2007, HLH receptors Major transcription factor families enriched in C. elegans neurons Helix-Loop-Helix receptor group	5	Copy	Oct 8 07
Stetina et al 2007, Expression of promoter-GFP re Expression of promoter-GFP reporters in the embryonic and larval pan-nueral and A-class motor nuerons	31	Copy	Aug 29 07
Stetina et al 2007, HLH receptors Major transcription factor families enriched in C. elegans neurons Helix-Loop-Helix receptor group	5	Copy	Aug 29 07
Stetina et al 2007, Genes enriched in pan-neural d representative genes enriched in the larval pan-neural dataset expressed in the listed neuron	8	Copy	Oct 8 07
Stetina et al 2007, dauer pathway genes dauer pathway genes are enriched in either the larval pan-neural or embryonic pan-neural datasets	26	Copy	Aug 29 07
Stetina et al 2007, Profile of Ion channel/recepto Microarray profiles detect known C. elegans neural genes with a list of Ion Channel/receptor/Membrane Proteins as an example	20	Copy	Aug 29 07
Stetina et al 2007, Larval pan-neural compared to Larval pan-neural hybridization compared to average reference intensities to identify differentially expressed transcripts Red are increased and green are depressed	6	Copy	Aug 29 07
Stetina et al 2007, SMAD receptors Major transcription factor families enriched in C. elegans neurons SMAD receptor group	3	Copy	Oct 8 07
Stetina et al 2007, Profile of Ion channel/recepto Microarray profiles detect known C. elegans neural genes with a list of Ion Channel/receptor/Membrane Proteins as an example	20	Copy	Oct 8 07
Stetina et al 2007, Transcripts encoding proteins Transcripts encoding proteins that function in synaptic transmission are enriched in the neural datasets but largely excluded from muscle	60	Copy	Aug 30 07
Stetina et al 2007, differentially expressed trans single larval A-class hybridization compared to reference intensities identifing enriched and depressed transcripts	6	Copy	Aug 29 07
Stetina et al 2007, differentially expressed trans single larval A-class hybridization compared to reference intensities identifing enriched and depressed transcripts	6	Copy	Oct 8 07
Stetina et al 2007, Differences in pan-neural and Genes expressed in mechanosensory neurons are differentially detected in the larval pan-neural dataset versus the larval A-class dataset, This data shows the difference in the expression of these genes	9	Copy	Aug 29 07
Stetina et al 2007, Interactome map of pan-neural A comparison to transcripts enriched in both embryonic pan-neural and larval pan-neural datasets revealed a single large interaction cluster	53	Copy	Aug 30 07
Stetina et al 2007, Homebox receptors Major transcription factor families enriched in C. elegans neurons Homebox receptor group	32	Copy	Oct 8 07
Stetina et al 2007, Aryl-hyrocarbon receptors Major transcription factor families enriched in C. elegans neurons Aryl-hyrocarbon receptor group	3	Copy	Oct 8 07
Stetina et al 2007, Expression of promoter-GFP re Expression of promoter-GFP reporters in the embryonic and larval pan-nueral and A-class motor nuerons	31	Copy	Oct 8 07
Stetina et al 2007, Transcripts encoding proteins Transcripts encoding proteins that function in synaptic transmission are enriched in the neural datasets but largely excluded from muscle	60	Copy	Oct 9 07
Stetina et al 2007, Homebox receptors Major transcription factor families enriched in C. elegans neurons Homebox receptor group	32	Copy	Aug 29 07
Stetina et al 2007, differentially expression in A Differential expression of axon guidance cues and receptors in A-class motor neurons graphic	6	Copy	Oct 8 07
Stetina et al 2007, Hormone receptors Major transcription factor families enriched in C. elegans neurons Hormone receptor group	37	Copy	Aug 29 07
Stetina et al 2007, Hormone receptors Major transcription factor families enriched in C. elegans neurons Hormone receptor group	37	Copy	Oct 8 07
Stetina et al 2007, Aryl-hyrocarbon receptors Major transcription factor families enriched in C. elegans neurons Aryl-hyrocarbon receptor group	3	Copy	Aug 29 07
Szewczyk et al 2005, Table4 down-regulated in diet Szewczyk2006 et al 2006 Table 4: 26 genes that are downregulated in CeMM(Chemical defined minium medium) versus NGM(nematode growth medium)	26	Copy	Jul 18 07
Szewczyk et al 2005, Table4 up-regulated in diet Szewczyk2006 et al 2006 Table 4: 24 genes that are upregulated in CeMM(Chemical defined minium medium) versus NGM(nematode growth medium)	21	Copy	Jul 18 07
Thoemke et al 2005, hemaphrodite microaray result Hermaphrodite-enriched somatic genes with in situ pattern in database	12	Copy	Oct 8 07
Thoemke et al 2005, Male microarray results Male microarray results showing genes know to be enriched that both were and were not shown to be enriched in this publication as well as Male-enriched somatic genes tested for sex-enriched expression by GFP reporter analysis	28	Copy	Oct 8 07
Thoemke et al 2005, Table 1 genes with sex-enriched expression	199	Copy	Feb 21 08
Thoemke et al 2005, GFP reporter expression for ge GFP reporter expression for genes with L4 male-enriched somatic expression, showing somatic gonad and sexually dimorphic tail structures	7	Copy	Oct 8 07
ViswanathanM et al 2005 S2 daf-16 Resveratrol ViswanathanM et al 2005 Supplement Table: Genes Found by Microrray to be Regulated by Resveratrol Treatment in daf-16 Worms (p<0.01)	3392	Copy	Jun 9 06
ViswanathanM et al 2005 T1 pqn genes ViswanathanM et al 2005 Table 1: C. elegans pqn-Related Genes Regulated by Resveratrol Treatment and SIR-2.1 Overexpression.PQN and ABU proteins are members of a prion-like glutamine/ asparagine-rich protein family. These genes were induced in WT by resveratrol,were induced even more in daf-16 by Resveratrol, were repressed in Sir-2.1 overexpressor	19	Copy	Jul 18 07
ViswanathanM et al 2005 Fig6A Resveratrol ViswanathanM et al 2005 Fig6A Resveratrol	13	Copy	Jun 9 06
ViswanathanM et al 2005 Fig6A Ethanol HS ViswanathanM et al 2005 Fig6A Ethanol Heat Shock	7	Copy	Jun 9 06
ViswanathanM et al 2005 S2 Resveratrol regulate WT ViswanathanM et al 2005 Supplement table: Genes Found by Microrray to be Regulated by Resveratrol Treatment in Wild-type N2 worms (p<0.01)	123	Copy	Jun 9 06
ViswanathanM et al 2005 T1 pqn genes ViswanathanM et al 2005 Table1: Table 1. C. elegans pqn-Related Genes Regulated by Resveratrol Treatment and SIR-2.1 Overexpression	19	Copy	Jun 9 06
ViswanathanM et al 2005 S2 UPR genes ViswanathanM et al 2005 Supplement table: UPR Pathway Genes are not Substantially Induced by Resveratrol	7	Copy	Jun 9 06
ViswanathanM et al 2005 S2 sir-2.1 regulated ViswanathanM et al 2005 Supplement table: Genes Found by Microrray to be Regulated by Low-Copy Overexpression of SIR-2.1 (p<0.014)	9048	Copy	Jun 9 06
ViswanathanM et al 2005 Fig6A Ethanol Paraquat ViswanathanM et al 2005 Fig6A Ethanol Paraquat	3	Copy	Jun 9 06
Wang et al 2003 Fig3 TransientList Wang et al 2003 Supplement4: List of Transient genes.we divided the dauer exit-specific genes into five groups: dauer-enriched, transient, early, climbing and late (Fig. 3). The expression of the genes in the dauer-enriched (540 genes) group decline in the dauer exit timecourse, showing either immediate or delayed kinetics. These genes are presumably involved in dauer-specific processes, such as stress resistance or prolonged life. Four groups of genes are induced as the dauer recovers: transient (195 genes, induced earliest and transiently), early (538 genes, induced to a steady state level), climbing (386 genes, induced and increasing continually) and late (325 genes, induced late) (Fig. 3).	195	Copy	Jul 19 07
Wang et al 2003 S4 genes pass two-wayANOVA P0 Wang et al 2003 Supplement4: genes pass two-way ANOVA P<0.05	1984	Copy	Jun 9 06
Wang et al 2003 S7 SAGE genes in the dataset Wang et al 2003 Supplement7: 305 SAGE genes in the dataset lists	305	Copy	Jun 9 06
Wang et al 2003 S3 genes pass one-way ANOVA Wang et al 2003 Supplement3: 2430 genes pass one-way ANOVA P<0.001	2430	Copy	Jun 9 06
Wang et al 2003 S4 Dauer Enriched Wang et al 2003 Supplement4: Dauer Enriched	540	Copy	Jun 9 06
Wang et al 2003 S4 Early genes Wang et al 2003 Supplement4: List of Early genes	538	Copy	Jun 9 06
Wang et al 2003 S4 TransientList Wang et al 2003 Supplement4: List of Transient genes	195	Copy	Jun 9 06
Wang et al 2003 S4 Climbing Wang et al 2003 Supplement4: List of Climbing genes	386	Copy	Jun 9 06
Wang et al 2003 S6 removed genes of contamination Wang et al 2003 Supplement6: 220 genes removed because of contamination	220	Copy	Jun 9 06
Wang et al 2003 Fig7 daf-16 Wang et al 2003 3 Fig7 daf-16 isoforms	3	Copy	Jun 9 06
Wang et al 2003 S4 LateList Wang et al 2003 Supplement4: List of Late genes	325	Copy	Jun 9 06
Wang et al 2003 S5-Fig1 genes common to feeding A Wang et al 2003 S5/Fig1: 446 genes common to feeding two-way ANOVA P<0.05. Hierarchical clustering was used to display the ratio of dauer to L1 at 0 hours (D/L1) and the expression ratios of the 446 commonly regulated genes during the dauer exit and L1 starvation timecourses.	446	Copy	Jul 19 07
Wang et al 2003 Fig3 Early genes Wang et al 2003 Supplement4: List of Early genes. we divided the dauer exit-specific genes into five groups: dauer-enriched, transient, early, climbing and late (Fig. 3). The expression of the genes in the dauer-enriched (540 genes) group decline in the dauer exit timecourse, showing either immediate or delayed kinetics. These genes are presumably involved in dauer-specific processes, such as stress resistance or prolonged life. Four groups of genes are induced as the dauer recovers: transient (195 genes, induced earliest and transiently), early (538 genes, induced to a steady state level), climbing (386 genes, induced and increasing continually) and late (325 genes, induced late) (Fig. 3).	538	Copy	Jul 19 07
Wang et al 2003 Fig3 LateList Wang et al 2003 Supplement4: List of Late genes. we divided the dauer exit-specific genes into five groups: dauer-enriched, transient, early, climbing and late (Fig. 3). The expression of the genes in the dauer-enriched (540 genes) group decline in the dauer exit timecourse, showing either immediate or delayed kinetics. These genes are presumably involved in dauer-specific processes, such as stress resistance or prolonged life. Four groups of genes are induced as the dauer recovers: transient (195 genes, induced earliest and transiently), early (538 genes, induced to a steady state level), climbing (386 genes, induced and increasing continually) and late (325 genes, induced late) (Fig. 3).	325	Copy	Jul 19 07
Wang et al 2003 S5 genes common to feeding ANOVA Wang et al 2003 Supplement5: 446 genes common to feeding two-way ANOVA P<0.05	446	Copy	Jun 9 06
Wang et al 2003 S8 SAGE genes in the dauer exit Wang et al 2003 Supplement8: 305 SAGE genes in the dauer exit time course	361	Copy	Jun 9 06
Wang et al 2003 Fig3 Dauer Enriched Wang et al 2003 Fig3: All Dauer Enriched genes	540	Copy	Jul 19 07
Wang et al 2003 Fig3 Climbing Wang et al 2003 Supplement4: List of Climbing genes. we divided the dauer exit-specific genes into five groups: dauer-enriched, transient, early, climbing and late (Fig. 3). The expression of the genes in the dauer-enriched (540 genes) group decline in the dauer exit timecourse, showing either immediate or delayed kinetics. These genes are presumably involved in dauer-specific processes, such as stress resistance or prolonged life. Four groups of genes are induced as the dauer recovers: transient (195 genes, induced earliest and transiently), early (538 genes, induced to a steady state level), climbing (386 genes, induced and increasing continually) and late (325 genes, induced late) (Fig. 3).	386	Copy	Jul 19 07
Welker et al 2007, Percentage datasets predicted t Percentage of genes in datasets that are predicte to be targets for miRNA, each dataset is a mutant of the particular gene	3	Copy	Oct 8 07
Welker et al 2007, pathogen responce and longevity Comparison of RNAi muntants rde-1 and rde-4 to a N2 wildtype when fed S. marcescens or a nonpathogenic OP50	2	Copy	Aug 29 07
Welker et al 2007, Analysis of drc-1 rde-1 rde-4 m Summary of microarray analysis showing silencing by small RNAs, fold change in selected genes, and overlap of misregulated genes between each of the three muntants	10	Copy	Oct 8 07
Welker et al 2007, Transcripts common to all three Transcripts common to all three muntant datasets including fold increase and decrease as well as description	22	Copy	Aug 29 07
Welker et al 2007, let-7 targets let-7 targets from dcr-1 muntant microarray	12	Copy	Oct 8 07
Welker et al 2007, Percentage datasets predicted t Percentage of genes in datasets that are predicte to be targets for miRNA, each dataset is a mutant of the particular gene	3	Copy	Aug 29 07
Welker et al 2007, let-7 targets let-7 targets from dcr-1 muntant microarray	12	Copy	Aug 29 07
Welker et al 2007, pathogen responce and longevity Comparison of RNAi muntants rde-1 and rde-4 to a N2 wildtype when fed S. marcescens or a nonpathogenic OP50	2	Copy	Oct 8 07
Welker et al 2007, Overlap of RNAi and stressor ex Microarray data sets of RNAi mutants overlap with those exposed to pathogen or toxin	3	Copy	Oct 8 07
Welker et al 2007, Overrepresented terms in gene o Significant gene ontologies (GO) for molecular function (MF), biological process (BP), and cellular component (CC) are shown for the overrepresented terms of each of the three muntants	3	Copy	Oct 8 07
Welker et al 2007, Chromosomal distrobution of mis Chromosomal distrobution of misregulated genes from the RNAi muntants of dcr-1, rde-1, and rde-4	3	Copy	Aug 29 07
Welker et al 2007, Analysis of drc-1 rde-1 rd Summary of microarray analysis showing silencing by small RNAs, fold change in selected genes, and overlap of misregulated genes between each of the three muntants	11	Copy	Sep 4 07
Welker et al 2007, Chromosomal distrobution of mis Chromosomal distrobution of misregulated genes from the RNAi muntants of dcr-1, rde-1, and rde-4	3	Copy	Oct 8 07
Welker et al 2007, Overrepresented terms in gene o Significant gene ontologies (GO) for molecular function (MF), biological process (BP), and cellular component (CC) are shown for the overrepresented terms of each of the three muntants	3	Copy	Aug 29 07
Welker et al 2007, Transcripts common to all three Transcripts common to all three muntant datasets including fold increase and decrease as well as description	22	Copy	Oct 8 07
Welker et al 2007, Overlap of RNAi and stressor ex Microarray data sets of RNAi mutants overlap with those exposed to pathogen or toxin	3	Copy	Aug 29 07
Welker et al 2007, rde-1 and rde-4 raw data GeneSifter output for rde-1 and rde-4 mutant datasets analysis for misregulated genes- (P<0.05 multi-sample t-test)	412	Copy	Oct 8 07
Wiener et al 2005, Gene expression between 10-day Comparison of gene expression between 10-day old daf-2 and 6-day old control worms broken daown by gene family and fold increase or decrease	139	Copy	Oct 9 07
Wiener et al 2005, Gene families with significant Gene families with significant differential regulation in dauer versus mixed stage SAGE libraries broken doen by gene family and fold increase or decrease	65	Copy	Oct 8 07
Zhang et al 2002, T1 mec-3 dependent genes Zhang et al 2002 T1 mec-3 depedent genes	38	Copy	Jun 9 06
Zhang et al. 2002, Fig2b overexpressed in mec-3MT Zhang et al 2002 Fig2b 25 genes overexpressed in mec-3MT	25	Copy	Jun 9 06